HsaINT0185975 @ hg38
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20031319-20034404:+
Coord C1 exon
chr13:20031319-20031435
Coord A exon
chr13:20031436-20034253
Coord C2 exon
chr13:20034254-20034404
Length
2818 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GGTTCCCATTGTGCATTTAGAAC
3' ss Score
5.2
Exon sequences
Seq C1 exon
GCTCTAAGTATGCAGTCATCTCCAAATGGCCAGTTTGTAGCGCCAAGTGATATTCAGTTGAAATGCAACTACTGCAAAAATTCCTTTTGTTCAAAACCAGAAATCCTGGAATGGGAG
Seq A exon
GCAAGTTGTATTTTGTAATGTGTGTTATCTAATGCTAAAAAGAAAGTCTAGTAAAATAAGTGTTGTATTTCCATCTGGAAACCTATTTCTTGGTAGATAAAAATATGCTTTTCAGATTTTTTTTTATGATTGGATTATTTATTCTCATGTGGGAGTGGAAAACCAACAAAGGATCTATGTCTTTTTAGGTCCAAGAAAAATTACTGAAGTCATATTCCTGATATATTGTATAAGTTCATAATAGTGTACAGAATGTCACTTTGTTTAGCTACGTACCTAGAGCAATTGTCTTTCCTTTTTTTGTCCCATGTTTCTCCCTGTCCTGTATTATCTGAGAACGATATTTTCTATCACTCAGTACCTGTACATATTAGAATGTATCAGTCATATACCACATTGTCATTTATAAAATGATACAATTCTGTAATTGTTTTTTTTTTTTTTTTTCTTTTTTTCTCAGAGTCTTGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAATCTCTGTCTCCTCAGTTGAGGTGATTCTCCTGCCTCAGCGTCCCAAGTAGCTGGGAATACGGGTGGGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGATCTCCAGACCTCAACTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCGGCCATAATTGTGTTTTAATAAAACAATAGTGGCCTATGAATCCCACTACAAGTTTATTTTCTTTTCCCTTTTTTCATTAGTTTACTGATTTGCTTTGACATGTCTCCATTAGCAATAACGCTGATGATTGACTTTTATTTCATAAGGGGGCAGTAATAGATGGATACATGGCCAAGACTGCCCAGGCTGCCCATTGCTTTCTTGAGCAATGCTTGCCTTTGGCCATTGTTTCTTTTCACTGCTTTAGGGGTGGGGCAGGGTGGGAGGTAGTGCATGGAGTATATGATAAAATGGTATACAAGATTTAGAAGATGTAGTATTAACACTGTTCTTGAGCCAAAATTTATTAGGAGCTGTTGGTGAGTCATTCAGTAACTAAGTCTTAAGTGAAAGGTGGTACCCAGAACTGGATTACATGATTTTTTTTCTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAATGGCGTGATCTTGGCTCACTTCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGTTTCCCAAGTAGCTGGGATTACAGATGCCTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGATCTCCTGGCCTCAGGCAATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATCACAGGCGTGAGCCACCGCACCCAGCCTGGATTACATGATTTCTAAAGTACTTTGGAAACCTGAAATTTCATTTTAACAGTTTAATGACTGGAACATTTTTTAGTTTATTATTTGCTTTGGTGCTGTCTCCAGATCATTTAAACCAATCCCTATTTGAGACTGTTGTTGGCATCCAGTGATGATTTTTAGTGACTGATAACCTTTAAGTAACAGCAGTAAGAATGAAGGCCCAGTAAGAGGTAATAAAGGAGTGATGAGGGAATGAAGAAAGAAATCCATTAGCAAGCATACAGAATAATAGTGTCATATAGAAAATGAAGATCCTGCATACACTGAATTTTGATACTAGATCAAAATGAGGTCCTTTTCACTGCATTTATGTCAATGCTACTCCACTTCTGTAGTTGTTTTGGTGTATTGCTTTTATTTACATGGAGGTTAAGTGTTAGAAGCAGTTAAGAGACACTGCCACACTGAATGAGAGTTGAGCGTGTCCCCCTGGGAGATTGAGAATTCAGTGGTCTCTTTCTCCTCACTCCATGTGGCTTCTTTGTTGCCTTCCTCCTTCTATAAATTACATAGTCATAATGGGGCAACTTTCCACTAATGATTGCCTTACTACTTGAGTTGATTCCCAGACTCCCTCACCTTCCTTATTCTGGTCTTCACATGTCTTTGCTAACTGTAAAGTAAATGGTTTAGACTTAGTCTGTAGCCTGCTCAATAATGAGAGAAAAGCTGCCTCCCTGGAAGTTTTAACTTGTTCATACCTGCTTGGGTTAATATTTGAAAAGTAGCTCTGGCTATTGTGGGTTTGGGCCCAGGAGAAACAAATTATTACTAATCATGTTCCATTCAAGGGAAACAACTCAGTCTCAGGTTCAGCAGCACGCTGTGTGATGGCACCAAATTGAATACTTCATCCATGATACATCTGTTACTATTAAGGTGTGTGGTAGGAATGTGATGGAGCCTACTTGTTTATACTCAACAAAGAATTTTTCTTTTTGACTGAAAATATTATTAGTGCCATAATTTTTATCTTTCTTTAGTTTACCTATGCTGTATTTTCCATCATTTTCTTCCCATTTCTCCAATTATGTTAGCAACACCAGTCTATCATCTTATTTAGTGATACTTTTACTTCCATTAAGTAATTTTAGGGTAGCTAATGGCACTGAATTTTGTGGAGCTATGTTTAAATTTGGCAGTGAATTGGTTAAACTAGGCATCCATGGCCTGTAGGAAATCTATCCCCAAGGGTCTTAACATTAAATAGGTAAATGATTTAACTTTGCTTCTGTAAAAGTGGCGTGTTTATTTCTTAAGCTTGTCGTCATATACTTACCAAGGTTCCCATTGTGCATTTAG
Seq C2 exon
AACAAAGTGCATCAGTTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741:ENST00000382870:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=64.1)
A:
NA
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains