BtaINT0164739 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36425677-36428273:-
Coord C1 exon
chr12:36428061-36428273
Coord A exon
chr12:36425749-36428060
Coord C2 exon
chr12:36425677-36425748
Length
2312 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CTTTTAAAATCTTCTTTTAGGTA
3' ss Score
10.78
Exon sequences
Seq C1 exon
ATTCGCCATGAAGTTAGCTTTAAAAACATGACTCATAAGCTGTGCAGTGACCATTGCTTTAACAGATACAGGATGGCTAATGGCCTTATAATGAACTGCTGTGAGCAGTGCGGCGAGTACCTACCCAGCAAAGGAGCTGGGAACAATGTCCTGGTTGTTGATGGTCAGCAGAAGAGGTTTTGCTGCCAGAGTTGTGTCAGTGAATACAAGCAG
Seq A exon
GTAATTCACCACTGGTTTGAGTGTGTTTTTAAATTGCTGTAATAGTTTTACTCTTAACAGCATTTAGTAACCAGATTTATCTTGGGATCTCATTTAGTTCCATTATTGTCTTAACATCTTAGAGATAACCTTATCTCAGATAAATGTGGAAATATATGTAGATGGTTGGAAATAAGGTTGTGATTTTACCATAGGTAAATGCTTACCACAGTGATTCTTGTTTTGAATTTTTTTTTAGGTGGTGGAGAGGGGTCACAAATACGATTTTTCAGATTGTTAATGCTTAGGAATGATTATCTTATTTGTAATATTAATTTGAAATTTAAGATGTTTTTGATCTAGTTTATTTTTTAATGATTTTAAAAGTCAGAAGTTGGCCCCATTTCTCTCTTCTGTTGGTTCCTACTTATTCTTTATACATATCAATTTTTAATAGTATTTTCTTTTCTGTTCTTTCTGAAAAGTTAAGGAAATAATTTGTTCTTAGTTTCTCTTTTTTCCCCTGTACAAAAGGGAGCATACGGTTATGTGCTTTTACTGTACATTTGTATCTTGGACGCATCCCCTGTCAATATATTCCTTATTCTTCTTTTTTTCATGGCTTAGTTTTTAGGTATTTTGTGAGCTGGTTGTTAACCCATTGTTAAAAATTAAGTTTGAGAAACTTATAAATTCCATTTGTATTAATCTGCTAGGACTGCCATAACAAAATACTGAGGGGTTCAGACAGCCAAGAATTTTCTTTCTCATAGTTCTGGAGGCTTAAAGATCAAGGTGCCCTTCCAGGGTGACTGGTGAGGCCACTCTGCCAGACTTGTAGGGAGCCTTCTCTCTGTGTCCTCATGTGGTCTTTCCTCTGTGCTCAGGAGAAAGAGTGTCCTGTAGGACTTGGTTTAGTCTTGACTGCCTCCCTAAAGCCCCTGCTCCAGATACAGTCTCATTGGGAGTAAGGGCTTAAAGATAATATATTTGGGGTGGAGGGAGACACAGAGTATTGAAAACAAAGAAAATAAATACTTAAAACTTAGAAATTCCTAATTATTTTATTATATTTTAATGTTATCTGTGCTCTTGAAGTTATTTCCATGACTGTATTTGTGTGGTGGCGATATCATACGTAATGGAGTGCATCCGTGTCTCCCTTGCTGACTTCATGTTCATTTTATGCTGGTGCCATGTGGATTATGGTGTTTCCTCTCACCTCCCAAGAACCAGTGGTCACCAGTATACAAGACTACACTGGGCTAACTGTTGTTTATTTCGTTACTTTGCTGTGGATGGTACTGCGTTATCTCTGTTGTTTTGCTGCTACAGATAACCAATGGTGAATAACCTGGCACAGGCACAGCTCAGAGATGTTTGGGTTCAGTTCCAGACCACTGCAGTAGATTGATTGACTGACTGAAAGTTGCTCAGTAGTGTCCGATTCTTTGTGACCCCAGGGACTGTATAGTTCATAGAATTCTTCAGGCCACAATACTGGAGTGGGTAGCTTCTCCCTTCTCCAGGGGTTTTCCCAACCCAGGGATCGCACCCAGATCTCCCATGTGGCAGGCAGCAGAACGAATATTAAAGTGAGACTTAGACTACTAAGTGTGCAAGTAGCATCAATGTCTAAAATAATGTACATACCTTAGTTAAAAATACTGACCATCATCTGAGCCTTATTTTTCTATAGGATCATTAAAGTTATGTAATAATTATTCTGTAAGCTGGGCGTTGGCACTAGGACAGAGCAGACAGGCATTTGTAAAGTTGGATGAGGTTGTTTTAAGTCACGAAATAGGTAATTAAGAATCAGCTTTTGCAGGTTGCTTGTTGACCTTTCAGTCTGGGAGCCTTTCTTTATATCTTTTTATATGGACCTAGAATCTATTAGATAGAGTGAAGTGAGTCAGAAAGAAAGATAAATATTGTATTCTAATGCACATATATGGAATCTAGAAAAATGGTTCTGAAGAATTTATTTGCAGGGCAGCCTTGGAGAAACAGACATAGAGAATAGACTTATGGACATGGGGAGAAGGAAGGAGATGGTGAGATGTGTGGAAAGAGTAACATGGAAACTTACATTACCATATGGAAAATAGATGGCCAATGGGAATTTGCTGTATGGCTCAGGAAACTCAAACAGGCTCTGTATCAACCTAGAGGGGTGGAATGGGGAGGGAGATGGGAGGGAGGTTCAAAAGGGAGGGGATGTATGTATACCTATGGCTGATTCATGTTGAGGTTTGACAGAAAACAACAAAATTCTATAAAGCAATTATCCTTCAAAAAAAAAAATAAAGCCTTTTAAAATCTTCTTTTAG
Seq C2 exon
GTAGGTAGCCATCCAGGCTTCCTGAAGGAGGTTCGAGATCACACACCAGACTCTTTCCTCACGCAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NA
C2:
PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development