BtaINT0164764 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84694071-84694730:+
Coord C1 exon
chrX:84694071-84694289
Coord A exon
chrX:84694290-84694579
Coord C2 exon
chrX:84694580-84694730
Length
290 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTCCTTCCCCATCCTCACAGAAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTCCTGCATGAGGTCAGCAATGGCAGCGTGGTGCACCGGCTCTGCAGCAATTCTTGCTTCTCCAAATTCCGGGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGCGGGGCTTACATCTACACCAAGACTGGGAGCCCTGGCCCCGAGCTCCTCTTCCACGAGGGCCAACAAAAGCGGTTCTGCAACACAACCTGCTTGGGGGCATACAAGAAG
Seq A exon
GTGGGGCCGAGGGAGTAGCGCATTAGAGGGCTGTGGAAGGGGGTGTGGTCCTTGGGTGAGAAATAAAGGTGCCTGACGGGTCGAGGGCTGGGAGAAATAAAACAAATAAAGGGGGTTTCAATTGTATCTGTTATGTTTTATTTTTGAAGCTGGCTGGTGGACACACAGGTGTTTGTTATCTCATCATCTATTCTTTTTTGTATGCCTGAAATATCTCATGTTTTAAAAATTTTAAAAATAAAAGTGAAGGGACAAATCCAGCCTCAGCCTCTCCTTCCCCATCCTCACAG
Seq C2 exon
AAAAACACACGGGTGTACCCATGTGTCTGGTGCAAGACCCTGTGTAAGAACTTTGAGATGCTATCCCATGTGGACCGTAATGGCAAGACCAGCTTGTTCTGTTCCCTGTGCTGTACCACTTCTTACAAAGTGAAGCAGGCAGGGCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(57.9=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCATGAGGTCAGCAAT
R:
TTGCCATTACGGTCCACATGG
Band lengths:
305-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]