HsaINT1047274 @ hg38
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71249019-71249679:-
Coord C1 exon
chrX:71249461-71249679
Coord A exon
chrX:71249170-71249460
Coord C2 exon
chrX:71249019-71249169
Length
291 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTCCTTCCCCATCCTCACAGAAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTCCTGCACGAGGTCAGCAATGGCAGCGTGGTACACCGGCTCTGCAGCGATTCTTGCTTCTCCAAATTCCGGGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGTGGGGCTTACATCTACACCAAGACCGGGAGTCCTGGCCCTGAGCTCCTCTTCCACGAGGGCCAACAAAAGCGGTTCTGCAACACAACCTGCTTGGGGGCGTACAAGAAG
Seq A exon
GTGGGGCCGAGGGAGTAGTGCATTAGAGGGCTGTGGAAGGGGGTGTGGTTCTTGGGTTATAAATAAAGGTGGCTGATGGGTCAAGGGCTGGGAGAAATAAAACAAATAAAGGGGGTTTCAATTGTATCCGTTATGTTTTATTTTTGAAGCTGGCTGGTGGATACACAGGTCTTTGTTACATCATCATCTATACTTTTTTTGTATGCCTGAAATATTTCATGTTTAAAACATTTAAAAAATAAAAGTGAAGGGACAAATCCAGCCTCAGCCTCTCCTTCCCCATCCTCACAG
Seq C2 exon
AAAAACACACGTGTGTACCCATGTGTCTGGTGCAAGACCCTGTGTAAGAACTTTGAGATGCTATCACATGTGGATCGTAATGGCAAGACCAGCTTGTTCTGTTCCCTGTGCTGTACCACTTCTTACAAAGTGAAGCAGGCAGGGCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130:ENST00000373998:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(56.4=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGATTCTTGCTTCTCCA
R:
TGGTACAGCACAGGGAACAGA
Band lengths:
294-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains