MmuINT1035869 @ mm10
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101414748-101415406:-
Coord C1 exon
chrX:101415188-101415406
Coord A exon
chrX:101414899-101415187
Coord C2 exon
chrX:101414748-101414898
Length
289 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTCCTTCCCCATCCTCACAGAAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTTCTTCATGAGGTCAGCAATGGCAGCGTGGTACACCGACTCTGCAGCGATTCTTGCTTCTCCAAATTCCGAGCCAACAAGGGACTGAAAACCAACTGTTGTGACCAGTGTGGGGCTTACATCTATGCCAGGCCTGGGGGCCTTGGCCCAGAGCTCCTGTTTCATGATGGTCAACAAAAGCGGTTTTGCAACACAACGTGCTTGGGGGCATACAAGAAG
Seq A exon
GTGGGGCCGAGGGAGTAGTGCATTAGAGGGCTATGGAAGGGGGTGTGGTTCTTGGGTGATAAATAAAGGTGCCTGAAGGGTCGAGGGCTGGGAAAAATAAAACAAATAAAGGGGGTTTCAATTGTATCTGTTATGTTTTATTTTTGAAGCTGGCTGGTGGACACACAGGTCTTTGTTATATCATCATTATACTTTTTTGTATGCCTGAACTATTTCATGTTTAAAAAATTTTAAAAATAAAAGTGAAGGGACAAACCCAGCCTCAGCCTCTCCTTCCCCATCCTCACAG
Seq C2 exon
AAAAACACACGTGTGTACCCATGTGTCTGGTGCAAGACCCTGTGTAAGAACTTTGAGATGCTATCACATGTGGATCGTAATGGCAAGACCAGCTTGTTCTGTTCCCTGTGCTGTACCACTTCTTACAAAGTGAAGCAGGCAGGGCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310:ENSMUST00000063577:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(56.4=30.1),PF064679=zf-FCS=WD(100=63.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
Other Inclusion Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGCAGCGATTCTTGCT
R:
TGGTACAGCACAGGGAACAGA
Band lengths:
300-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types