GgaINT0075043 @ galGal4
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2274895-2275841:+
Coord C1 exon
chr4:2274895-2275107
Coord A exon
chr4:2275108-2275690
Coord C2 exon
chr4:2275691-2275841
Length
583 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GTTCTGCTCTGTGTTTGCAGAAG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTCCAGCATGAGGTCAGCAATGGGAATGTAGTTCACCGCATTTGCAGTGACGCCTGCTTCACCAAGTTCCGAGCCACCAAGGGGCTGAAAACCAACTGTTGTGACTACTGTGGACTTTATATATACAATAAAGGCATGCCCGTGGAGTACCTCTTCCATGAAGGCCAGCAAAAGCGCTTCTGCAACTCTAGCTGTCTCAACAGTTACAAGAAG
Seq A exon
GTGTGTGGAGTCGGCTGCTGGGGGTTGCAGGAGAGGGGGCTCCTCTTTGGGCACTCATCTCCTTTCTTCAGTTGGCACAGGATTCTTTATGCAATAGCAGGCAGCTTGAACCTCCTTGGCCTTCTGTTGCTGACAAAATATCTTAAGAGGTTGCTGTGAAGAAACTTTGAAACAGAACTTAGTTATACTGATTGGGGCCCATCTTGAACCCAAGCACAGGTCAAACACTCAGACACAGGTGGACAGGGCAGTGCCACAGGTAAATGCAGTTAGCAGGAGATGACTTCTTTGGGATGCATCCCTGAAGCTTGGTTATATCTGTAGCCTGAGTAGACTTCTCTTAAGTACTAATGGGACTTCCAAGTCCTGTATTCAGGCCAGAGTACCCTTCAAGTAATAGGCAGGGGTGCCAAAGGCAGGTTTTTTTTACTACAGCCTGGGCCTACAGGCTATGAACCTGGCTCTCACATCAGGTCTTTACTGCGGGAGAGCTGCCCTGTGGTGGATGCAGTAGTGGGATGGAGTATAAGCTCATGGGCTGTGTTGGGCTCCTTGACAGCTCTGTTCTGCTCTGTGTTTGCAG
Seq C2 exon
AAGAACACTCGAGTCTACCCTTGCATGTGGTGCAAGACGCTGTGCAAAAACTTTGACATGCTGCCCAATGTGGATCGCAGTGGCAAGATGGGACTGTTCTGCTCCATTTGCTGCACTACCTCCCACAAAGTGAAGCAGTCGGGCTTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(5.0=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAGGTCAGCAATGGGAA
R:
CGACTGCTTCACTTTGTGGGA
Band lengths:
349-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]