BtaINT0164765 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84694580-84695062:+
Coord C1 exon
chrX:84694580-84694730
Coord A exon
chrX:84694731-84694946
Coord C2 exon
chrX:84694947-84695062
Length
216 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CTTTTCTCTCTGTGCCCCAGGCC
3' ss Score
10.56
Exon sequences
Seq C1 exon
AAAAACACACGGGTGTACCCATGTGTCTGGTGCAAGACCCTGTGTAAGAACTTTGAGATGCTATCCCATGTGGACCGTAATGGCAAGACCAGCTTGTTCTGTTCCCTGTGCTGTACCACTTCTTACAAAGTGAAGCAGGCAGGGCTCACTG
Seq A exon
GTAGGTGCAAAGCCCTCTTCTCTGAGACCCCTGCTGGCCTTCCTTCTACCTCCCATACTCCTTCTATAGTAACCCCTGCTGCCCAACTTCGGCCCCAACCACACTCTCCCGTGGATTTCCCGTTCCATCTCTGCACTGCCTTACACCTGCTGTGTGTTCTCTCTTTCTCTCTTTCTCTCCCTCTCCTCTCTCTGTCCTTTTCTCTCTGTGCCCCAG
Seq C2 exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCCTGTTACTACAACAAGGTTGATCGCACAGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
NA
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACCCATGTGTCTGGTGC
R:
GGAACTTGGTCCAGCAGCTG
Band lengths:
253-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]