RnoINT0169154 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71309043-71309518:-
Coord C1 exon
chrX:71309368-71309518
Coord A exon
chrX:71309159-71309367
Coord C2 exon
chrX:71309043-71309158
Length
209 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TCTTTCTTTCTATGCCCCAGGCC
3' ss Score
9.58
Exon sequences
Seq C1 exon
AAAAACACACGTGTGTACCCATGTGTCTGGTGCAAGACCCTGTGTAAGAACTTTGAGATGCTATCACATGTGGATCGTAATGGCAAGACCAGCTTGTTCTGTTCCCTGTGCTGTACCACTTCTTACAAAGTGAAGCAGGCAGGGCTCACTG
Seq A exon
GTAGGTGCAAAGCCCTCTTCTCTGAGATCCCTGCTGGCCTTCCTTCTACTTCCCATATTCCCCTCTTGTAGAGTAATTTCTGCTGCCCAACCTCGGCCCCAGCCACATCTTCCCATGGACTTTCTATTCCATCTCTTCCCTACCTTACACCTTCTATGTGCTCTCTCTTCTTCTTTCTCTTTCTTTCTCTCTTTCTTTCTATGCCCCAG
Seq C2 exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCTTGTTACTACAACAAAGTTGATCGCACAGTCTACCAGTTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
NA
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGTGTGTACCCATGTGT
R:
GGAACTTGGTCCAGCAGCTG
Band lengths:
260-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]