HsaINT0186014 @ hg19
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70468536-70469019:-
Coord C1 exon
chrX:70468869-70469019
Coord A exon
chrX:70468652-70468868
Coord C2 exon
chrX:70468536-70468651
Length
217 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TCTTTCTCTCTATGCCCCAGGCC
3' ss Score
9.77
Exon sequences
Seq C1 exon
AAAAACACACGTGTGTACCCATGTGTCTGGTGCAAGACCCTGTGTAAGAACTTTGAGATGCTATCACATGTGGATCGTAATGGCAAGACCAGCTTGTTCTGTTCCCTGTGCTGTACCACTTCTTACAAAGTGAAGCAGGCAGGGCTCACTG
Seq A exon
GTAGGTGCAAAGCCCTCTTCTCTGAGTCCCCTGCTGGCCTTCTCTCTACCTCCCATACTCCCCTCTTCCAGAGTAATCCTTGCTGCCCGACCTCAGTCCCAACCACATCTCCCCATGGATTTTCTGTTCGTCTCTTACACTGCCTTACACCTTCTGTGTGCTCTCTCTCTCCCTCTCTCTTTCTCTTTTCCTCTCTCTCTTTCTCTCTATGCCCCAG
Seq C2 exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCCTGTTACTACAACAAGGTTGACCGCACAGTCTACCAGTTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-ZMYM3:NM_001171162:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
NA
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGTGTGTACCCATGTGT
R:
GGAACTTGGTCCAGCAGCTG
Band lengths:
260-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)