Special

GgaINT0075044 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr4:2284691-2285515:+
Coord C1 exon
chr4:2284691-2284841
Coord A exon
chr4:2284842-2285399
Coord C2 exon
chr4:2285400-2285515
Length
558 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
ATTCCTATCTGTTTCATCAGGTC
3' ss Score
9.13
Exon sequences
Seq C1 exon
AAGAACACTCGAGTCTACCCTTGCATGTGGTGCAAGACGCTGTGCAAAAACTTTGACATGCTGCCCAATGTGGATCGCAGTGGCAAGATGGGACTGTTCTGCTCCATTTGCTGCACTACCTCCCACAAAGTGAAGCAGTCGGGCTTGGTTG
Seq A exon
GTAAGGACCCTCATACAGTGATTTAGTCACCTCTCTACTCAACTCCTTTCTTAGTACTTTTTATTACCTGTGGATGAGACTGGAAAGAAGGTGGGAAGGTGTCTCGGGGGGAGTCCAGGGAGATAAGTGAAGGAGATATGGAGAGGGAGGTACCCATTGCAACATGGAGACATCGTGATGCTGAGGGGTAGTGTCTGTTGCTAGGATGCAGGAGGCAGTTGTAGTACCATACTGTGCTGGCATTGTCCTTCCCATTACATAGATTACCACTGTGTTCAGGAGTGGGTATGGTCTCCGATGACTGATGCAAGTATTGCAAGCTGTTTTGTCCAGATTTCCATATGGCCAGGATCACTTCTTTGAACCAGTCTGCTTTCCATCCATGTTTAACATTTCTGTCCTAGCAGAATCTGGTGCTCTTAGTTTCCTGGTGTTCTTGTCCCTTCATTTTTTGGTAATAGCTTGACTGAGGATGAGTGAGTAGATTGCATGCCATCCTCAGAATCTAGACCCATGTCCTGTGCTGCTGCCCTCACCAATTCCTATCTGTTTCATCAG
Seq C2 exon
GTCCCCCTAGGCCCTGCAGCTTCTGCAGAAAGAGTTTATCTGAACCCTGCTATTACAACAAGACAGACCGGGTTGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(5.0=3.9)
A:
NA
C2:
PF064679=zf-FCS=PD(92.5=94.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCGAGTCTACCCTTGCA
R:
TGGAATTTGGTCCAGCAGCTG
Band lengths:
262-820
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]