BtaINT0164766 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84694947-84695314:+
Coord C1 exon
chrX:84694947-84695062
Coord A exon
chrX:84695063-84695227
Coord C2 exon
chrX:84695228-84695314
Length
165 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TTTGTCTTCCTTCCCTCCAGCGC
3' ss Score
11.58
Exon sequences
Seq C1 exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCCTGTTACTACAACAAGGTTGATCGCACAGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
Seq A exon
GTACTCCAGACCCTGGACGAGGGATAATGGGTGTGGCAATAGAGAGGGTATGAGACCTGGGGTAGGTAGGCCTGGGCAGAGCAAAGAGCAAGCCTGACTTCCCCTCCCTCCGCCAGCCCACTGCACACATCTTGGCCCTCCCTTGTTTGTCTTCCTTCCCTCCAG
Seq C2 exon
CGCACGAGCCCCGAGGGGGGCATTCACCTGAGCTGTCACTACTGCCACAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACCCTGCAGCTTCT
R:
CCAGTCCAAGACCTCAGGCTT
Band lengths:
194-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]