GgaINT0075045 @ galGal3
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
NA
Coordinates
chr4:2285400-2287635:+
Coord C1 exon
chr4:2285400-2285515
Coord A exon
chr4:2285516-2287548
Coord C2 exon
chr4:2287549-2287635
Length
2033 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GCTGTCTTTGTCTTCTACAGCAC
3' ss Score
10.51
Exon sequences
Seq C1 exon
GTCCCCCTAGGCCCTGCAGCTTCTGCAGAAAGAGTTTATCTGAACCCTGCTATTACAACAAGACAGACCGGGTTGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAATTCCAG
Seq A exon
GTACTGAAAAATCCTTCATGCCGGGCTGGGCCCCAGAGCTCCTGCCTCTTTTCACACTTAGCAGAGGCTGCAGCTTCTTCAGGCTCCTCAGGGAGTATCCATAAGAAAATCTCTACTGGAGCACAGGCATTCCAACGGACTGCAGTTGCTTCATTCCTTAGTCTTGGCCCTACCTTCCCCTCACTTCATTTGGAGTAAGACTGACTGTAATTCTCTCCAGTCTTACCAGGTTATGCCAAGTAGGAGTACAGCACAGAGCTGCATTGCATGAGTAGTTTGGAACATAGTGGCCTTACGGTGGTGCTGCAAGTAAGCCAGCAAAGCACCATGGGCACCTGCTAGCATGGAAAGAGGCAGAGCTGCTCTCTGAGCCAGAGATCACCAAGAAACAGAAGTCTTCTAGGTCACGTTGTCTAAAAACTTAAAACCAGCAGACTTGGATACCTTATGTCTAATAGTCTTCAAAGGCTTGACTGATGACGTTGAGTTTCCTGGTGTTGAGTTTGAGCATACATTAAATGTTCATAGAATTCAAAGGCAACTGGAAGAATATTCATTTTGTACAGTTGCCAAAGAACAAAGCAGCAGGCAGGAAGGCCTGGGAAACTTAGGCCAGGATATGTCTTGGGCAACTGAGAAAACTTAGAGAATCTAGAGAAGGAAAGCTATTTTCTGGCAGTTGCAGTGTCTGTTTGTCTGTTACTGTTTTCTTTTTCTATTCCTTTTTTTTTTATATATATCATGGTGTAATAGTTTGCTAAGATCACGTGTTGTGTGGATAAAGGGTAGCTGATGTGTCGTTACAGTTGTAGACTTCATAAGACATTGGAGTCGTTGCCATATAAAATCAGCATTGTGACATGACATTAAAGCCATGCATAACCTGGATTAGGATCCATCTTACTGACAGATCTCAGAACGCCCTTGATAAAGAAAAGCCACTGAAAGGAGTGCTTCAAGATGGCTTCTCAGGGATCAGTATTAAGCCCAAGGAGTCGAATGTCTTCATCAGTCATCTGGAAATAAAGTCAAAGTAAGCGCACTGAAATTTTGCAGATGAAACAAAAACTGGTGAAGTGTTAAGTGGTGCTGAGGTCAGGGCAGTCATACACAGCACAGCAATTGGATCCCTTGACAAGGTTGGTTCCTCCTAATGTGTACTTACAGTTCAGTGCAAGATCAGCCTTGCTCAGGTGATGCGGGGATGTGAGTCCTGGAAAGTAAGGGTTTAGGAAAACAAAGCCTCTTGATTGCAGCAGATAGGCCATTAAGCACGAGTGCGTCAGTTTGCAGCTAGGAAAAGAAGGATTAAGTTATTGTAAAAACAAGCAGAAGAGCAGGAAGTGAGAAGTTAGGGGGCTAGGGAGCAGAAGTTCTACCTAGAGTACTGCACAGGTAGGAAGGATATTCATCCAATGCCCAAGTTATTATTAATGTTGAAGAAAAATAGGAAGCATGCTGAAGAAAAGCTGCAAAATTGCACAGAGCCTCAAAAAAATGGCACAGACAGAGCACCTTATGTGAGATTATCAGAACGAGAACCTGGAAGATGACTTCATTAATGAAGATATCCCTGTGGACAAGACACCAAGTATTAAGTGGCTCTTTAATCTAGCAGAGGAATGTGGGATGAGAACGGCTGCTTGAATTCTGAAGTTACGTTACCCTGAAGATGGAAACCAGGCTTCAAGATCTTTTAGAGAAGGTCTCAGAAGAGGTAGCAGAGCCACCATCTCTGAATGCGCTCAAGTGCAGAGGGGTGGGAGCCTGCAAATGCCTTCTGGAGAAGAGCCGGACCCAGTGCATTGGAAGCAAAGTGGAATTACTCAAGAATCTGCTGTCCAGGAGCTTGAGATGTGATCTGATGGACCGACCGTGAGTCACTGACGGTGGCAGCCAGCGCAGGTGTGAGCAGGGGCAGATGGACTGCTGTGGTCAGTGGAGCAGGCAGGACGATTGGTGGCAGTGCAGAACGGGGTGCATGCTGCCCTCTGTGTGCATCTCTCTCCATGAGCTGTCTTTGTCTTCTACAG
Seq C2 exon
CACACCAGCCCGGAAGGTGGGATCCACCTGAACTGCCATTACTGCCACAATCTTTTCACCGGGAAGCCAGAGATCCTAGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]