MmuINT0180502 @ mm10
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101414175-101414537:-
Coord C1 exon
chrX:101414422-101414537
Coord A exon
chrX:101414262-101414421
Coord C2 exon
chrX:101414175-101414261
Length
160 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TCTGTCTTCCTTCCCTCCAGCAT
3' ss Score
10.81
Exon sequences
Seq C1 exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCTTGTTACTACAACAAAGTTGATCGCACAGTCTACCAGTTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
Seq A exon
GTACTCCAGGCCCTGGACCAGGGATAAAGGGAGTGGCAACAGGGAAAGGGTAGGAGAACTGGGATAGGTAGGCCTGGGTAGAGCAAAGAGCAAGCCCGACCCCCCCTCTCCTCCAGCAGTGCACACATCTTGCCCCCTTATCTGTCTTCCTTCCCTCCAG
Seq C2 exon
CATACTAGCCCTGAGGGGGGCATTCACCTGAGCTGTCACTACTGCCATAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310:ENSMUST00000063577:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACCCTGCAGCTTCT
R:
CCACTCCAAGACCTCAGGCTT
Band lengths:
194-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types