DreINT0181022 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21634376-21634734:-
Coord C1 exon
chr9:21634619-21634734
Coord A exon
chr9:21634499-21634618
Coord C2 exon
chr9:21634376-21634498
Length
120 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ACTTTGCTATCCAAATGTAGAAT
3' ss Score
6.58
Exon sequences
Seq C1 exon
ATTCTGAGCCATCGTGCCACTTCTGTAAGAGAAATGCATTACCTCAGTATCAGGCAACTTTACCTGAAGGAAAGGTTTTGAGCTTTTGCAGTTCACAGTGTGTCACCAAGTTTCAG
Seq A exon
GTACTTCAGTTTTCTCTATCTGTAGAACTCAAGCTTAAACGTGACTCTAAATATTAGGAATGTCCATGTCAGAGTACAGAGTGGTAATGTTCTTCTGGTGACTTTGCTATCCAAATGTAG
Seq C2 exon
AATGCCACAATCCAAACATCAACCAATGGGCAACTTCCTGCTTCAGCTTCTGAAGACATCCAGCTGAAGTGTAACTATTGTCGCAGTTCTTTCAGCCTGAAGCCAGAGGTTCTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(60.0=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGAGCCATCGTGCCACT
R:
CTCCCATTCCAGAACCTCTG
Band lengths:
239-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]