MmuINT0180480 @ mm9
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57540339-57544794:+
Coord C1 exon
chr14:57540339-57540454
Coord A exon
chr14:57540455-57544677
Coord C2 exon
chr14:57544678-57544794
Length
4223 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TACTTTGTTCTTTATTTTAGGCT
3' ss Score
10.4
Exon sequences
Seq C1 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTATAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
Seq A exon
GTTTGTTGCTTATTTTTCCCTACCCCCATAAAATGCACATAGATAACAATCAGTATAATATGCTTTATCTTTTCTGTTACTTTTAATTTGTTGAGTGCCTGATGAGAGGGTAGAGATTATAGCCTGAATCACAGAAGGCCTGGCTGTACTTTCATACATTGTTACTGTGATACAGAGCTTGAAGGAACATGAATTTTAGTATGGTTTAATTCAGTGCTTTTCTTGTTAGTTTGAATAGCTGTGGTCTGTGATAAATGAATGAAAGTGTCTTTAGCCTGTAAGTACCAAGAATATATACTTTCCAAATTAGAAATGAACCTTGTAAAAAGGGAATTAGTCTTAGAGTAGACCTTGATGGGATCCATTTTAGGGAGATAGTATTTATTTGGTATATGTTCTGAACTGTCTTACATAGTTCTTCAGAGTTGGAGTATGGATAATTCCAGAGGATAATGTTACAGATAGTGTTGAAACTTAGCATGGTTGACTGATCTGAGGGAATAGTTTAGAGGGAACTCAAGCAGTAGTTAGGTAGTACTAGTAGGTTTACCTATTGTATGTGAAAATTTCAGGGTATTGCCCAAAGATTCAAACCAGTGCATAAAGCCATGCTTTATGAGTTAATTCATCCAACAGTTCTCTGTGTGTGTGTGTGTGTGTGTGTGTATTCAATCTTATGTAGTCTCATTTATATACAAATAAGACAAAGTTGACAAATAGACAATATTTTTATCTCTCAAGCTGTATAATTTGAACTTTATATCTGTGTTAGTTATTTTCCTTTTAAAAGCAACGTAATAGGGCTGGAGAGATCAGTAGTTAAGAGCACAGTGTTCTCTTTCAGAAGGTCTGTGTTCAATTCCTAGCACCCTGATGGCAGCTCATAACTGTCTGTAATTCCTTTTCCAGGATCTGGCACCCTCAGTCAAAACACCAGCACACATAAAAATAAATATGTAAAAAAAGATACTAATATTATCTCTTTAAGCTACTATATAAACAAAAGTTGCTATAAGTTCACAGTTTTAGAAGTTAAAAAGTCCAATATGGCTCTTGCAAGTTTGTGACTCAAAGTCCTTTGAGTAGATGAAGCTGCATCAGATGGCCCAAAAGACATGTAACATTTTAGTCACCTGATAGTTAATTTTTTTTTTTTCTGTTCAAGGTGACAAATTTTATTTTTCCCACACAGGTTATATACTCATAGGAGCAGGAAGGGGGTGGGGGTGGGGGTGGGGGTTGCTTTGTGTTTGGGTAATGCACCCATTCCCAGGAACAGGATGTTGACTGGTCAAACAGTTCAGCAGGAAGATCAGAACAGAAAGGGTTACTAGGCACTATCCACAAGATTTATAGCTATTTGTTCTCGGCTGACTTCAGGATCTATGTCTATTTGTACTCAGCTGGGCTAGTGCTTTCCCACAGAGGCCAAGACTTTGTAAGTAAGCACTTATGGCTGACAAGGCAGTTAACATTCAAACAGGGTCGCTCCAACAGTCACATAGCATCACTTGGGTCACTTGAGGACTCTTGTCTCTGGGGCAACTAGGTCTTGGGGTTTGCACTTAGTATTACAATACATACCGACAGGCTAAACCTCAAAAGAGTCAAGTAACTTGGGTCCCTGAGGGCTCACAGAGACTTGGTCACCAACTAGGGAGCATACAGGGACTTGCCCTAGGGCCTATATACATTTGTAGCAAATGTCCTTCTTGGTCTTCATGTATGGCCACAAACCAGTGGAACAGGAGCTCTGTCTCTGCCCCTACCTGGATTGCCTGGTTGGGTCTCAGTGTGGGAGAATGTGTCTAGTCCTGCTGGACTAGATGTCTCTAGGTGGGGTCTATCCAAGGGGGCTCTCCTTTTTCTGAAAAAGTGAGGGAGTAATTGGGGGAGAGACTTATAAGGGTGGGACTGGGAAGAGAGTATGGGGTTGTGATTTTGATGTAAAGTGAACAAAAAATAGTTATTGGGAAAAAAACAAAATGAAATTCTCAAAATTCTCAAGAATTCTAGGCTTTGGGTGATTTTTTTTTTCCTTTTTAAATATTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCTTCCCCCCCCTCTCCACTCCCCTACCCACCCACTTCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTCCATGACCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGATACATATGCAGCTGGAGACAAGAGCTCTGGGGTACTGGTTAGTTCATATTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTAGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATTGAATAAAACCATCCAAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATACAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTAGATGCGAATGAAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCAAACCTAAAGAAAGTCATGTGCATGAACATATAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGATAGAAAAAGATAGAAAAGCACTAAGGGGAAAAGGTCAAGTAACATGTAAAGGCAGGCCTATCAGAATTATACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGATAGATGTTATACAGACACTAAGTTAATTTTTTTAAAACAAACTTTAATTTTATGGTACTGTGTGGTATTTAAAAATGATTGTTTCTTCTTCTAGTGTTTGTTGAATAATTTTATTAGCTACTTCATATAGGCACAAGGTTATGTGTCACATATCTATGTGATGTGTGATATACTTCAAAAGAAAGCTAAATACCAGTGTAATTCAGGTTGAGAATCAGAGAAAATATCTTTGTATGGTAGTGGCTTACACTTTTAATCCCAGCACTCAGGAGGCAGAGACAGTGGATCTCTTGAGTTTGAGGCCAGCGTGGTCTAAAGAGTAGGTTCCAGGACGGCCAGGGCTACACCGAGAAGAAAAGATATGAAAATGAAAGAAAGGAATAGAAAAGAAAGGAAAAGAAAATGAATTAGAAGGTGAAAAGTTCTTTTGTGTTGGTGGTAATCCTAGTATTCGGGAGACAGGATGATCTCTGTTTTACATAGCTAGTTCCTGGACCTCAGAGACTGTATGGAGACCCTATCATAATGAAGAATCAGAAAACAAACAAAAACAAAAACCAAAAAACCATTATAAGTCCACGTATGTTTATATATCCTATCTTATTCTGTGAATTATTTCTGGTATGAATCCCAGCTTTTATTCATTTCCCACCTAACTCTGAAGAATTGATTACCTTTTTAAAAAGCAATATATGCTGTTTTTCTTGATAATAACTTGGAGTGAGAGTTAAGGGAGTGATGTGAACTATTTGTTACTTAATATTTGAACCTTGGAGAGACCTTTGTGTGTTTTTCTATCTCCTTGCTAACTTGTCCCTTCCTCCATCTCTCCTCACTCCTCTTCCCTGATTTTATTTACAGTTTAGAACTCGCGAAACTAACCTTATTGTTCTCATTTTCTTCAGCTGAAATAATTGAGCTATAGTTTTTTCTTTTCATATTTAGATAATCTCTCAGTAAATAATTCAATCCTAAAGCTAACAGTGGGTTGTTTTTGTTTTTGCTTTTTTTTTTTTTTTTTTTTAAGTACTGGGATTGAAGCTAGGACCTTGTGCTTGTTAAGCAAGCATCCTTTCATTGAACTATATTTCAGTTCTTTGACACAATGCATTTTAAAGGCAAAATTAAGAATTGCTGTTTTGTGAACTAAAGAAGTAATTTACAAAGAAACTTGCTTTCTGCATGTAATAGACATTTGATAGTTCTTACAGCTAGAAGTTCTAAAATACTTGTCAGACTAAGTGTACTTTGTTCTTTATTTTAG
Seq C2 exon
GCTCTAAGCATGCAGTCATCTCCAAATGGCCAGTTTGTAGCACCCAGTGATATTCAGCTGAAATGCAACTACTGTAAAAATTCCTTTTGTTCAAAACCAGAAATCTTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-Zmym2:NM_029498:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: