HsaINT0185974 @ hg38
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20027203-20028064:+
Coord C1 exon
chr13:20027203-20027318
Coord A exon
chr13:20027319-20027984
Coord C2 exon
chr13:20027985-20028064
Length
666 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
GTTGTGTGTGAAAATTTCAGGGT
3' ss Score
5.59
Exon sequences
Seq C1 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
Seq A exon
GTTTGTCGTTTATTTTGCATAACCCATGCCCCCAATAAAATACACATAGAAAATAATCAGTGTAATATAATATGCTTTATTTTATCTTAATTTTTACGTAGCTTGTTGAGGGTCAAATTGGAAGGTGGATATCCTAGTCACAGAATATGTGGCTGTACCAGTTTTCTATTTTAGCCTGGATAGTCTAATTGAGATTATAATTATTACTCTGATACAGATTTTGAAGGAAAAGAAATTTTAATATAGTTCAGTGCTGATGTGTAGTTTTTTCTTATTAGATAGTTTGAATAAAATGTGAACCGTAAGGGGAACTGTTATGTGACAAACGGATAGAGGACCTAGATGTATTTAGCCTAGAAGTGATAAGAATACTTGCTTTCTTCATATGTTAGAAATGGACCATGTAAAGAGGGAATTAGATTTTTTACACTAGGCCTTAATTTAATACAAGATCAGTTTAGGGAGACATTTTTCATTTTGGTAAATGTAAAGAAAGACTTGCTAACATAGTTTTTCAAATTTGGAGTATGGATAGTCTCAGAAGATAGATTCTTGGAAGCGTTCAAACTTAACCTGGTTGACCACTAGGAAGGAATAGTTTAGAGGGAATTCAAGCATTAGTTAGGTGATACGATTAGGTTTACCTGTTGTGTGTGAAAATTTCAG
Seq C2 exon
GGTATTACCCAAAGGTTCAAACCCGTGCATAAAGCCATGCTTCATGAGTTAATTCATCCAACAATTCTGCTTTATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741:ENST00000382870:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTATTTGCCATTTTTGTAAGCG
R:
CTGGAATAAAGCAGAATTGTTGGA
Band lengths:
191-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains