BtaINT0164742 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36416575-36419766:-
Coord C1 exon
chr12:36419651-36419766
Coord A exon
chr12:36416692-36419650
Coord C2 exon
chr12:36416575-36416691
Length
2959 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TGTCTCTTGCTCTGTTTTAGGCT
3' ss Score
11.9
Exon sequences
Seq C1 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGGAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAGTTGTATAACTTTTGCAATTCCAGTTGTGTGGCTAAATTCCAG
Seq A exon
GTTTGTTTTTTATTTTGCTTAATGCTTCTGATAAAATATAGGTAGAAAATGAACACTGTGACATCTGTATTTAACATGCTAAGTTTTACATGATATTGTTGACGGTCAGATTGGAGGGTGGCGATTCTGGGCTAGAGCAGGTGTGACTTTACCAGTGATCTACTTAGTGTGGGTACTCAAATTGGCTTCTTAACTGTTATTTGTGATACTGATCTTGAAGGAAAATATATTTTAGTTATCAACCTTTAAAACAAAAGAGTAGGTGGTCTAGCCAGCAAAATCGAGTTCATTTGGGAATAGCCAATCAGGAGGCACCACAGACAAGTCTGGAGAACAAAGGAGGGTTAGGGTTGCCTTGGGGGTGGTTTTGAGCCCAAGTTACCTGGAGGCTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCTTGGAAAATCCCATGGGCGGAAGAGCCTGGTAGGCTGTAGTCCATGGGGTCGCTAAGAGTTGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCTGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGTGACTTAGCCGTACCTGGAGGCTGGTGAGAATCTGAGTTGTTGATGGCCATGGAGACAGTCTCCCTCCTGCTGGGGTCTGTGGGGTGAGCTGACCGGGCTTCTTGGCTCTGTTTTTCAGTGAGATTTTTCTTGATTCACTTTCACACAGTTTCATTGTGCTCAGTGCCTGCTGTGCAGTGTGTTCTTAATAGGATGGTTTGAGTAACATCTGACTCTTAAGGGGAAGGTTCTATTTTGTTGTTCTAAGTGGATGGAAAAGTAGGATGTGAAGAGGTACCTGGAATAACACTCAAGTTTGGCCTTGGAGTACAAAACAAAGACTAATAGGGTTTTATCAAGAGAATATGCTGATCATAGCAAACACCCCTTTTCCAAAAACCCAAGAGATGCCTGTACACATGGACATCACCAGATGGTCAGTACTGAAATTAGATTGATTATATCCATTGCAGCTTAAGATAGAGAAGCTCTATACAGTCAGCAAAAATAAGATCTGGAGCTGACTGTAGCTCAGATCATGAGCTCCTTATTGCAAAATTCAGGCTCAGATTGAAGAAAGTAGGGAAAACCACTAGACCATTCAGGCATGACCTAAATTAAATCCCTTATGATTATACAGTTTAAGTGACAAATAGACTGAAGGGATTAGATCTGATGGAGTGCCTGAAGAACTATGGATGGAGGTTTGTAACATTGTACAGTCAGGCACTGTACATTCAAAAGAAAAATAAATGTAAGAAGGTAAAGTTGTCTGAGGAAGGCTTACAAATAGCTGATGAAAGAAGAGAAGAGAAAGGTATACCTTTCTGAACTCGAGTTCCAAAGAATAGCGAGGAGAAATTAGAAGGCCTTCTTAAGTGAACATGCAAAGAAATAGAGGAAAACAATAGAATGGGAAAGACTAAAATCTCTCCAAGAAAATTGGTGACATCAAGGGGAATATTCCATGCAAAGATGGGCATGATAAATGACAGGAACAGTAAAGACCTAACAGAAGCAAAAGAGATTAAGAAGAGTTGGCAAGGATACACAGAACTATACAAAAAAGGTCTTAATGACCTGGATAACCATGGTGTGTAACTCACCTTGAGTCAGACATCCTGGAGTTTGAAGTCAAGTGGGCCTTAGGAAGCGTCACTGTGAATAAAGCTGGTGGAGGTGATGGAATTCCAGGTGAGCTATTTCATATCCTAAAATATGATGCCGTTCAAGTGCTACACTCAGTATGCCAGCAAATCTGGAAAACTCAGCAGTGACCACAGGACTGGAAGGGGTAAATTTTCATGTCAGTCTCAAAGAAAGGCAATGCCAAAGGATATTCAAACTACTGTACAGTTGCGCTCATCTCACATGCTACGAAAGTAATGCTCAAAATTCTCTAAGCCAGGTTTCAACAGTACGTGAACCGTGAACTTCCAGATGTTCAAGCTGGATTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCACTAGATCATAGAAAAAGAAGGGAGTTAAAAAAAAAATTTACTTCTGCTTCATTGACTATGTTAAAGCCTTTGACTGTGTGGATCACAACAAACTGTAGAAAATTCTTAAAGACATGGGACACTCATGTTGGCTTATCTCACTTCAACCTGTAAATCCTTTTAACTTTTTAAAGTGTAATGAAACTGAAATTCCTGGTTATCCATTCATTGTTGTTCAGTCACTCAGTCATGTCCGACTCTTTGTGACCCCATGGACTGCAGCACGCTAGGCTTCCCTGTCCTTCACCATCTCACAGTTTGCTGAAACTCATGTCCATTGAGTCAGTGATGCCAGCGAACCATCCTGTCCTCTGTTGTCCCCTTCTACAAATCTTTTCCTCCCCAACATGGCATGTAAAAAACATCGAGAAAAATTATGAAAAGACTATTTTCACGGATGCACTTGGAATGAAAATGATTGCAGTATCAGCTGTTACAGGCAGAGTTGGGAATTACGTTCTTCTGTATTTCGTTACTGGTTCAGGACTTGGTGGATCGACCTCACTATTTATTATTTGTTTATATTTTCTTAAAGAAAAAATCACAGTTGAACTTTATATTTTTTTCTTTTTTCATCTTTAATAGAAATTGTGTGGTAAAAAATGAAATTCAGTTTCATCAAACTAAACAGTATACTAGTATTTTTAAAGACAAAATTCAAAAATGTCATTCTATATGTTGAGGAGATAAGAACTTAAAGATGTGTATTATTTTCTGGATGTAGTTGGTACTCGATGGTTGTCACAAATAAAACTTGTAAAACCACCTCAGACTTGGTGTCTCTTGCTCTGTTTTAG
Seq C2 exon
GCTCTCAGCATGCAGTCGTCTCCCAACGGCCAGTTTGTAGCGCCAAGTGATATTCAATTGAAGTGCAACTATTGCAAAAACTCTTTCTGTTCAAAGCCAGAAATCTTGGAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=64.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development