BtaINT0164767 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110986330-110988583:-
Coord C1 exon
chr3:110988061-110988583
Coord A exon
chr3:110986392-110988060
Coord C2 exon
chr3:110986330-110986391
Length
1669 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTGTTTTTTTCTTTCAATAGCTA
3' ss Score
8.88
Exon sequences
Seq C1 exon
GGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACAGATTCAAAATAAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGAGTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq A exon
GTAATAATTGTTGGAATAGAGCCATAAAACACAGTAAATAACAACATAGTGATAATAATACAGCTTTTATTACTTCTGATACTAAGCAAAGTGTGAACAGTTAAATTCATTGTAAGCTTGTCATTTTTCTTTTATCCTTGTTCTTTGCAGAGTGACTGAATTTCTCCCAGTAACTATTGGTAATGGTATAAATGGTTGAAAAATAGCTCTAAACCTCATTTCTCCCTCCCCTGGTTGCAATATTTTGATGAGAAGGCAAGATACTCGAATCACCTGTTCATTTTCTTTGGTTGAACATTGGAACCTGAAGTTGGATTTAACTTCTTTGTGCTGTAAGCACTAATTCAAACTGCTGTCCCACCAATTAGTCCAATTTAGGGAGGGTTTTCCTTTTTGATATCATTTCTATTTTATGTTTTAAAAGTTTCTTGAGACTCCTCTTGAGCCTCTTTGCCCAGCATACCCTATACTTTAGCTTCAGTTCCATTCTTGAATATACATTTTCTTATTTCTATGCCTTTCTTTTCTCTTGCTGTTCCATTTGCCTGCATGTCATTTTCTCTCTTGTATATGTGCCTGTAAAAGTGCTTCTTATCTGACAATACCTAACTCATAAACCTCTTCTACCCTGTGGTCATCCCTAACCTCTCTGCATCAAGAATGTTTATTTCCTCATCTATATTTCCATAGCATTTTGTTTATGCCTCATTTATTTATAGTAATTATCACATAGTATCATAGCTGTTTGTTTTGCCTTTACTTGTTAGTGTGAGAGTTTATTGAGGGCTGGACTGTATCTTACTCATTTTTGTGTTCTTGGGGCCTAACCTGGTGTAGTGAAAATAGTAAAATTTCAATAAATATTCAATAGGTGTGAAAGAAAGCAAGGTTGAATATTCTGGTCCTTGTATTACTATTTCTTCTGACAGTGCTAGGAAAACTGTGATAGAACAAATCAGTATCATTATAAAGAACAATTAGTTTAAGTATCTATTATGTACAAGGGTATACTGTGTTTTTCAGTATATATTATTTAATGCATTTTCAGTATGCCTAGAAGGGATAAATTATATGGGTACTTATCTTCAGGGAACATAATATCTAATAGCAGAAGGGACAAGTCAAGTAGTTGAAGTGTTAATGACCAGTTGAATAGCATAAAATTTAATTTATAATTGAAGACACTGTAGAAGAGTTTTTAATAAAGCAGTACAATAATATTTCTTTGAAATAACTGAAACTGTGTTTTAGGTATTCTTAGAAGAGAAATGATTTTTAACTTAGCGGGCAAGGGAAGGTTTTCTAGAGGAGAGGTGATTTTTGAACTGAGCTGAATCTGGAAGACTGTGTAAAGATTAGGATAGTGGGGACTTGGAATGATATAAGCAGAGATGGGGAAGAACAAACTTAAGTAATTTTTAGAACATAGTGAATAAAGTAACCACTTTATTTAGGTTTGAGCAAGGAGATAGCTAAAAGTTAGGTGGGGCCAGATTGTTTATTTTGAGTGAAACTACCTGTGGGTATTTTTTTGTACCCTTTTCACTCTAAGGAGCATCTTTGTTGGAAAGAGAGGTGATTATCAAGTAATAGCTTTTTAGGTCACTCTTTGTAAGATTTGTTATTCATATACATATGTTTGTTTTGTTTTGTTTTTTTCTTTCAATAG
Seq C2 exon
CTAATCAAGTTGAAGAAACATTACATACCCATTTACCACAAACCCCAGAAACAAACTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGAAGTAGAGAGAAGAGTCA
R:
AAAGTTTGTTTCTGGGGTTTGTGG
Band lengths:
342-2011
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]