RnoINT0169178 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144940344-144942704:-
Coord C1 exon
chr5:144942183-144942704
Coord A exon
chr5:144940406-144942182
Coord C2 exon
chr5:144940344-144940405
Length
1777 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TGTTTGTTTTCTTTCAATAGCTA
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGTGTCATGGATACAGAAATGTCTGAAGACACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAGTCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAGCTCATACTGATGGTAGTTTGGAGATAGAGAGAAGAGCTTCTCATCATGAATCAGACAATGAAAATGAAATACAAATTCAAAGTCAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGAAAAGATTTTTGTTTAGTGAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGCGAAAAACGATTGGATAAACCCCATAAAGGTTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq A exon
GTAATAATTATTGGAATAGAATTATAAAATGTAATAACAAATATCAATAATAGAGCTTTTATTACTCTTTATGTTAAAGTGAAATATGAACAGTTTTAAGCTTCTTCTAAGCTCTCAGATTTACTTTCTCTTATTCTACAAAGTGATTGAGTTTTTCCTCATAACATTTCATTGTCGTGTAAGTGGTTGAAAATATCTCTAAATCATATTTTTTTCTTCTTCTTGGCTTGCAATATTTTGATGAGAAGGCAAGATACTTGAATCGCCTATTCAGTTTCTTTGGTTCAACATTAGAATCTGACGTTGGAATTAGCATCTTTGTGCTGGAAGCACTGGTTTAAATTGCTATCCCACCTCTTAGTCTAAACCAGGGAGTTAAAGCAAATCCCTCCACCCCCACCCCACACCCTGTTTTAGGAGTTCATTGACGTTCCTTTTGATTCTCTTTATACAGTGCACCCTGTACTTAGCTTCAGTTCTGTTCTTGAGTATATCACACATTGCTGTGTGCTTGCCTTTCTTGCTGTTTCATTGGTATGCCATTTTTTTCTCTGTATATATATACACTTGTAAAATTATTTCTTATCTAGTGGAGCATAATTCATGAATCTTTCCTACTTTCTAGTTATTCCTAAGGATGTTCTTCTTATATTTTCACAGAATTTTATTTTATGCCTTATTATTTATAGTATTTATTGCATTATTTTGTTTCTGTTTTCTTGACAGCCAGATTGTATCTTACTCTTTGTATTCTTGGGATCTAGGCTTTTACAAGAAGATTGTAATCCTCTCCCAAATGTTAAATTGATGTTTAGGAAAGCAGGTACACTATGTCAATCCATGTATTTCTCTTCAGAAAATCCTAGGAAAGTGTATTTTAGAAAGAAAGAACCAGAATAGTGAAGTATAGCGACTGTTTTGAGTATATATTATATACAAGGGTGTACAAGGGCGTACTTATTTCTAACATGTGTAACTAGGTATATATAGTTTAGTGGCTACTAATGGATATTGAAGTTTTAGGAAAAACTGAAGGAACATAAAGGACAAGACAAGGTAGATAGCAGAGGTGCTAACAATGAGTCGAGTAGCCTAAGATTGAATGTGTAAGATAAGATAGTGGTAGAAGAGTTTGTCATGGAACACTGTAATATTTAAGTAACTTGAGTGTTACAGTGATTGCTTTTTTCATATTTGAGAGGGGTAAACTGGCCTGGAGCTCACTATAGTTCTGCTTTGTCTCTTAAATGCTTTAACAGGTGAGCCACCATACCTACCCTAATCTGCCATGTCCCTCCCCCTCCAGAGTGCTTTGTATTAGACTCTGGACCTTTGTGCATGCTAGACAAGTCCCCTGCCACTGAGCCACATTCCTAACTCACAGGAAATTCTTAGGAGAGCCTTAGTGAACAAGGAATGTTTTTCTGCAGAGGTGGGTTTTGAACTGAGCAGAGTCTGGAAACTATAAATACTGAGATAGACAGCAGAGACCTGGTGAACTTAGTAGAACAGCAAAGGACAACAAACACAGTTTTCAGAGTGAAGTCAGCACCCTTTATGACCGAGGAAAGGTGTGTGGTAAGGCTGAACGGTAGGGGAGACCAAGTTGTGTAGAACTTTGAGTGAAACTTTTTTGGGTTCTTTGGAACCTAGTTCACTCTTAACAGCATCTTTTTTTGGGATAGAGAGATGATTTCAAATAATAGCCTTTTAGGTCATTCTTTATGAGACTTGTTATTCATATGCATGTGTTTGTTTGTTTGTTTTCTTTCAATAG
Seq C2 exon
CTAATCAAGTTGAAGAAACATTACATACTCATTTACCACAAAACCCAGAAACAAACTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCATACTGATGGTAGTTTGGA
R:
AGTTTGTTTCTGGGTTTTGTGGT
Band lengths:
357-2134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]