MmuINT0180530 @ mm9
Intron Retention
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126600813-126603267:-
Coord C1 exon
chr4:126602746-126603267
Coord A exon
chr4:126600875-126602745
Coord C2 exon
chr4:126600813-126600874
Length
1871 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TGTTTGTTTTCTTTCAATAGCTA
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGTGTCATGGATACAGAAATGTCTGAAGATACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGATTGTAGTTCAAAGGACAACCTTGTTTCTTCAGTTCACACTGATGGTAGTTTGGAAGTAGAGAGAAGAGCTGCTCATCAGGAATCAGACAATGAAAATGAAATACAAATTCAAAATCAGTTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGAAAAGATTTTTGTTTAGTGAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGGTTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq A exon
GTAATAATTGTTGGAATAGAATTATAAAACATAATAACAAAGTACCAGTAATAGCGCTTTTATTGATCTTAAGTTAAGTACAAATAGTTTTAAGCTCCTTGTAAGCTCTGTTTTACTTTCTCTTATTCTGCAAAGTGATTGAATTTTTCCTCATAACATTTCATTGTTATATAAATGGTTGAAAAATATCTCTAAGTCATAATTTTTCCCCTTCTTGGCTTGCAATATTTTGATGAGAAGGCAAGATACTTGCATCACCTGTTCCATTTCTTTGGTTGAACATCAGACTCTGAAGTTGGAATTAGCATCTTTGTGCTGGAAACACTGGTTTAAATTGCTATCCCACCTGTTAGTTTAAACCAGGGAGTTGCAATGAATTACCCCCACTGTTTTAGGAGTTCATTAAGTTCCTTTTGATTCTCTTTACACGATGCACCCTGTACTCTAGCTCCAGTTCTGTTCTTGAATATATCACACATTTCTTGTGTGCTTTCCTTTCTTGCTGTTTCATTGGTATGCCAATTTTTTTCTCTGTGCATATATACACTTGTAAAATTATTTCTTATTCAATGAAGCATAATTCATAAATCTTTCCTACTTTATAGTTATTCCTAAGGATATTCTCTTTGCTTATATTTTCACAGAACTCTATTTTATGCCTTATTATTTATAGTATTTGTTGCCTTGTTTTGTTCCTATTTTTGACAGCTGGATTGTATCTTACTCTTCTTTGTATTCTTGGGACCTAGGCTTTTACAACAAGATTGTAATCCTCTCCCAAATGTTAAATTGATGTTTAGAAAAGCAGATGCACTGTGTCAATCCATGTATTTCTCTTCAGAAAATCCTAGGAAAAATGTATTTTAGAAAGAGGGAACCAGTATAGTGAAGAAGAGCAACGGTTGAGTATGTGTTATATACAAGGCTGTGCAAGGGCATAGTTTATTTCTAACATGTTATTATAGATATAATTTATATACATATATATATGTGTGTGTGCGTATACACACACATACATATATATACACATACATATATATATAAATAAATAAATTAATAAATTAATTAATTAATATCTCTTAATGGATATTGACACTTTTGGAGTCTTTCCAAAGGAGCATAATATCTAGTAGTAGAAGGGACAAGACAAGGTAGAGAGTAGAGGTGCTAATGAAGAGTTGACTAGCCCAAGATTGAATGTGTAAGATAAGATAGTGTAAGAAGAGTTTGTCATGGGGCACTGTAATATTTAAGTAACTGAAGTGTTAAAGTGATTGCTTTTTTCACATTTGAGAGAGACAAGCTGGCCTGGAGTTCTCTGCACTTCTGCCTTGTCTCTTCAGTGTTTTAACTAACAGGTATGAGCCACCATACCTAGCCTAACTCTGCCATGCCCCTCACCCTCCAGAGTGCTTGGTATTAGACTTTGGATCTTTGTGCATGCTAGACAAGTCCCCTACCACTGAGCCACATTCCTAACTCACAGGACATTCTTGGGAGAGACTTAGTGAATAAGGAATGTTTTTCTATAGAGCTGGGTTTTGAACTGAGCAGAGTCTGTAAACTATAAATATTGGGATAGACAGCAAAGACCTGGTGAACTTAGTAAAACTTCAAATGAGAACAGTTTTCAGAGCATAGTAGATCAAGTCAGCACTCTTTATGAGCGAGGAAAGGTGTGTAGTAAGGCTGAATGGTAAGGGAGACCAAGTTGTGAGGAACTTTGAGTGAAACTTTTTTGGGTTCTTTGGAACCTAGTTAGAACATCTTTGTTAGAATAGAGAGATGATTTCAAATTAGCCTTTTAGGTCATTCTTTATGAGACTTGTTATTCATATACATGTGTTTGTTTGTTTGTTTTCTTTCAATAG
Seq C2 exon
CTAATCAAGTTGAAGAAACATTACATACTCATTTACCACAAAACCCAGAAACAAACTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-Zmym4:NM_001114399:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACTGATGGTAGTTTGGAAGT
R:
AGTTTGTTTCTGGGTTTTGTGGT
Band lengths:
353-2224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: