HsaINT0186044 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35824526-35826856:+
Coord C1 exon
chr1:35824526-35825047
Coord A exon
chr1:35825048-35826794
Coord C2 exon
chr1:35826795-35826856
Length
1747 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTTTTTTTCCTTTCAATAGCTA
3' ss Score
9.36
Exon sequences
Seq C1 exon
GTGGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACAAATTCAAAATAAGTTAAAAAAAGACTTTCCTAAACAATTTGATCAGGTTTCTGTCTTTAAATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGATTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq A exon
GTAATAATTGTTGGACTTAGAACCATAAAACACAATTAAAAATTACCGATCATAATATATAGCTTTTATTACTTTTGATGTTAAGTGAAGTATGAACGGTTAAATTCATTGTAAGCTTGTCATTTTTCTTTTGTCCTTGTTCTTTGCAGAGTGACTGAATTTCTCCCAGTAACTTTTGGTAATGGTATAAATGGTTGAAAATAGCTCTAAACCTCATTTCTCCCTCCCCTGGTTGCAATGTTTTGATGAGAAAGGCAAGATACTTGAATCACCTGTTCATTTTCTTTGGTTGAACATTGGAACCTGAAGTTGGATTTAACTTCTTTGTGCTGTAAGCACTAATTCAAACTGCTGTCTCACCACTTAGTCCAAATTAGGGAGTTATTTTATTTTTTTAATTTTAATTTAATTTTTTGTTTATTAACTCTCACCTCTATCTGAAAGGGAGTTTTTTTTTAATAAAAAAAACCCAAACATTTCTAATTTATGTTTTAGAAGTTTCTTGAGGTTCCTCCTGAGCCTCTTTGCCCAGTGTACCCTATACTTTAGCTTTAGTTAACATTCTTGAATATATCACATATTTCCTTCTATGCCTTCCTTTCCTCCTGCTATTCCATTTGCCTGCATGTCATTTTCTCTCTGTATATTTGCTTGTGAAAGTACTTCTTATCCAACAATGCCTAACTCATAAACCTCTTCTACTCTGTCATCATTCTAACTGCTCTACATCAAGAATGGTTTCCTTATCTATATTTCCACAGCATTTTCATGCCTCATTATTTATAGTACTTATCACACAGTATTATAGTTCTATATTTGTTTTACCTTACCTACTAGTGTAGGAGTTGAGGGCCAGATTGTATCTTACTCATCTTTGTATTCTTGGGGCCTAACCTGGTGTAGTAAAATAGTAATTCTTCAATAAATGTTCAATAGCTGTGAAGGAAAGCAAGTATTCTATACCAGTCCTTGTATTTCTTCTAACAATGCTAGGAAATGTATGGTAGAAAGAACAAACCAGTATTGTTAAAAAGACAGCTTTTGAGTATGTACAAGTCTGTGCAAGGATATACTATATTTTTCTCTATAATTCAGTATATATTTCCAATATCCCTTCTTGGGGTATGAGAGTCATGTTTCTCAAGGAACATAATGTCTAGTAGTAGAATGGACAAGACAAGTCAGGCCGTAGAAGTGCCAATGTCCAGCTGAATAGCGTAAGATTTAATTTACAGTTAAAGACAGTGGTAGAAGAGTTTGTCATAAGGCAGTTCAAAAAGATGTCTTTCAAATAACTGAAACTGTGTTTTAGGGATTCTTAGAAGAGAGATGATTTTTAACTTAGTGAACAGGGAAGGTTTTATAGAGGAGAGGTGAATTTTTAACTGAGCTGAGTCTGGAAAACTGTATAAAGATTAGGATAGACAGAGGGGACTTGGAATAGAATAAGTAGAAATGGGGGAGAACAAATGCAAGCAATTTTCAGAGCAAAAATAATTTTTTTTTTTTTTTTTTTAGGTTTGAGCAAGGAAAAAATGTAGGGTAAGGCTAAAAGCTAGGTGGGGCCAGATTGTGCAGAACTTTGAGTGAAAATACCTTTTGGGTGTTTTTGGGACCCAGTTCACTCTAACGAGCATCTTTGTTGGAAAAGAGAGGTGATTATCAAATGATAGCTTTTTAGGTCACTCTTTGTAAGATTTGTTATTCATATACATGTGTTTGTTTGTTTTTTTTTTCCTTTCAATAG
Seq C2 exon
CTAATCAAGTTGAAGAAACATTACATACCCATTTACCACAAACCCCAGAAACAAACTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGATAGCTTGGAAGTAGAGA
R:
AGTTTGTTTCTGGGGTTTGTGGT
Band lengths:
346-2093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)