BtaINT0164809 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111246680-111247144:+
Coord C1 exon
chr3:111246680-111246854
Coord A exon
chr3:111246855-111246952
Coord C2 exon
chr3:111246953-111247144
Length
98 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TGTGTGTTTTTCTTTCCTAGATT
3' ss Score
11.52
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATCACAACCCAATTTGAAAATTCCTCTCCTAGCAAAGATTTCTGCAGCCAATCATGCCTTTCTTCTTATGAGCTGAAGAGAAAACCTGTTGTTACCATATATACCAATAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
Seq A exon
GTAAGTTCTATTTCGTCTTTATTCAGATTCTGTTCACAGATCAGAGGTTTTCTACTGGCTCTGCTTACTTTGTATCTCTGTGTGTTTTTCTTTCCTAG
Seq C2 exon
ATTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGCGATGCCTGTTTTTCAAAATTTCATTCTACCAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTACTGCTACAGTAGCTCTGGTCCCTGCCAGTCCCAGAAGGTCTTTAGTTCCACAAGTATCATGGCGTATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948:ENSBTAT00000029263:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=52.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGCCAATCATGCCTTT
R:
ACAGGCATCGCTACAAAGACC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]