HsaINT0186067 @ hg19
Intron Retention
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35480298-35480763:-
Coord C1 exon
chr1:35480589-35480763
Coord A exon
chr1:35480490-35480588
Coord C2 exon
chr1:35480298-35480489
Length
99 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TGTGTGTGTTTATTTCCTAGACT
3' ss Score
9.26
Exon sequences
Seq C1 exon
AGACATTTTAAATCCTAAGGATGTGATCACAACTCGCTTTGAGAATTCCTATCCTAGCAAAGATTTCTGCAGCCAATCATGCTTGTCATCTTATGAGCTAAAGAAAAAACCTGTTGTTACCATATATACCAAAAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
Seq A exon
GTAAGTTACATTTTACTTTTATTGGGATTCTGCTGAAAGAGATTTTTTTTTAACTGGCTCTGCTTATTTTGTGTGTGTATGTGTGTGTTTATTTCCTAG
Seq C2 exon
ACTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGTGATGCCTGTTTTTCAAAATTTCACTCTACAAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTATTGCTATAGTAGCTCTGGTCCTTGCCAATCCCAGAAGGTTTTTAGTTCAACAAGTGTCACGGCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-ZMYM6:NM_007167:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=52.5),PF060447=DRP=PD(84.4=91.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGCCAATCATGCTTGT
R:
ACAGGCATCACTACAAAGACCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)