BtaINT0164917 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004620 | ZNF133
Description
Bos taurus zinc finger protein 133 (ZNF133), mRNA. [Source:RefSeq mRNA;Acc:NM_001110090]
Coordinates
chr13:38717678-38722805:+
Coord C1 exon
chr13:38717678-38717773
Coord A exon
chr13:38717774-38720923
Coord C2 exon
chr13:38720924-38722805
Length
3150 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GACTCTTCTCTCTGCCACAGAAC
3' ss Score
9.95
Exon sequences
Seq C1 exon
GCATTCCGTTTTCTAAACCAGAACTCATCACCCAGCTGGAGCAAGGGAAGGAGACCTGGAGAGAAGAGAGGAAATGCTCGCCCGTCAGCTGCCTGG
Seq A exon
GTGAGTAGGGACCCTGGGTGGTTCAGAGGGCTGGGGGTGGGGAGGTCTTTCTGCCGGGCCCCTGGCCGCTCACCGTATGCACTGCCCTCCTGGCCTCCTTCCAGACCTGCAGCGGCACCCGAGCGTCCTGGTGTCTCGTCTCCCTGCACTGGGTTTGCCGTCTCTGCCTCACTTAGTTCCCTCCCACATACATAGTCTGGTGGCTCATGTTACTATATTTTTAAAAGGATATTTTCCCTGGATTAGAATTTTAGATTGGCTTATTTTTTCACCACTTTAAGGATACTGTTCCCCTGTTCAGGCCTCCCATTGTTTCTAATAAGAAATCAGCTGTCATTTCCACAGTTATTGCTTTGTTTTTTTGTTACTTTTTAAACCTCTGGTACTTTCAGAGCTTTCTGTATTTTGGTGTTCAGCTGTTTGACTGCGATGTCACTATTTTTCCTGTCATAGCGTGTGCTCAGATTTTTGAACCTATAAATTTATGGTTAGAGCCACATTGGGGAGATTTTGGGACATGATTCTTTCATGATTCTTTTGTTCCCTTCTGTTTCCTTCTTTTTGGAATGATATTCACATGTGTATTAGTCCATTTTACATTGTCCCACAGTTTACTGAGCCTGTTTTTTTTTTTTTTATAACTTTCCATTTTTGTGATGATGCTTCCTAATTGTTCATTAATGAAGAGCAGATTTTCCTTTACCTCCTTTAACAGAAAAGCAGATACTTAGAAGATACATTTTTAAGTGAAAAATTGCAAAACAATGTTTATTACATAGTTGGGTTTGTGTGAAAGACTGTGTCAACATGTATATGTGAACATAGACATCTGCATTATTATTCACCATGATCAGTGGTTAGCTTGGGGGGTAGAGAATTGGAAAGAGTGGAGTTTCTGGGGAGTTTTTTGACTTGGCATTCTTTTTAAATGATAGAGGAATAGATAACTGTAGGGAATTGTGTGTTTTTTAGCTTTTAAAATACTGTTGACAATTTCATAATAAAGAGAAGTATATGTTTTTTTTTTCTGTAAGAGATTTTCTATTTCTCAGTTTTATCAAATTTGAAAGCTTAGTTAATTGTGTCTTAAAATCAAGGGAAATAGCATATATAATAGAAATCATTTATATTTTTTAAGTTTTTATATCCTTGTTTTTGGTCTGCTAAGAGTCATAGCAGATTACTCGCCAATGTCATTGTAATTTATATCAAATCCTCCATTTCTTTCTAAGTTTTTGCTATATATTTCACTTCAGTGTACTGTTAGGCATGTAAAGGTTCATGACAATTTTATCTCATTCATTAATGAAGTTTTTAATGTTAAAATTCTTTTGTTCCACATTATATTCCTTAAACTTTCATTTTTTTCTAAAAAACTTTTTTTTATTTTACATTGATGTATAGCTGATTAACAATGTTGTGATAGTTTCAGGTGGACAGTGAAGGGACCCAGCCATACATATACATGTATCCATTCTCCCCCAAACTCCCCTTCCATCCAGGCTGTCACATAACATGAGCAGTGTTCCCTGTGCTGTAGAGTAGGTCCTTGTCAGTTATCCATTTTAAATAGAGTCGTGTGTTACATATCAATCTTATTATTTCTTATTAGTCTTAGCACCTGCTTTGCTGTGGCTCTTTGTTTTTTAGAGAGTTTTGGTATGATATCTAATGTGATTTGCGGTGTCATGTAGCTGCTATTGCATTTTCTGCCAAATCAACTGTTATCTTTGAATAGGGACTTTGGCCCTTTCACATTTACTGGAACAGCTGATGGATTTCATGGGACTTACTTAGGGACTGTAGGGCAGGTACAGAGGCACTTAGGGAAGAGCTCAAGGTAGAAGCAGCAGCATCTCTCCTAGCTCAGGCTGCTGAAACACAGCAGCAGAATTCATGGCAGAAGCAAAAGGTTTTACTGTGTTTCTGGAGGCTCGCAGTTCTTGGTTGGCAGAGGTGTTGGCAGTTCCCTCCTGGACTTTGAATGGCCACCTCCTCACTCTGTCCTAACCCGGCCTTTCTGAGGCTGCACATCCTGGCTTTCCTCCTACAGGGAGGTCACCAGACATATCGATTAGAGCCTTATGACTTCTTTTAACCTTAATCACCTCTTTGAAGGCCCTGTCTCAGAATACAGTAGCATTCTCTACTGATGGAATAATTCTAGAATGTAGATGTATACACAGTTAGTTTTCAAAAGTTCAGTTCATCAGTGAATGCAAGTGTTCAGGCAGATGCAGTGAGGTCTGGACCTGGTTCCTCAGACTATGTGATCTTGCATTCCGCCAGCTGAGTAGAACCAGCAGTGCTGAAGCAAGGTGTTCAGTGTTGACATCTCCTTATGAGAGGTACTATGAGAAGAAAACTTTTATATTGATTCCTGGTGCCATTTTTATTTTGGTTAATTATGGAAGTTAACAAGACTCAAACTGATCCGTGGCACCAGTCATTGGGGGACCTAGACCGTGTGTGTGCTGTCTACTGCTGAAAGCCTCCCGAAAGTGAAAGTGAAAGAAAGTGTTAGTCACTCAGTTGTGTCCAGCTCTTCTGCAGGTACCTCTGTCCATGGATATTCTCCAGACAAGAATGCTAGAGTGGGTTGCCGTTTCTTCCTCCAGGGGCTCTTCCCGACCCAGGGGTCAAACCTGTGTATGCTGCATTGGCAGGCAGATTCTTCCCTGTCTGAGCCACCAGGGAAGCCCTGCCTTGTGGGAATTCTGGTCCAGAGTAGGCCTCTAATAAGTATTTGTGCGTGAGTCGGGACCCTCCAGGTTCAGGTGTCTCACATGTGGTATCTAACCACTCCACTGTGTTGCCTCCTACACCAGGGTCTTCCAGGCTCAGGGACAGCTCTCTTCTTCCACCCCCATCCTCCCAGGGAGACAGGGAAAGAGAAAGACGTTCCACGTGGGTCCTCTGGTTAGAGCTCTCTTGGTCACAGACAATCCCTTTGGACCCTGTTTGTGTCACTGGGTGGCTGTGCGTTAGGAGGTCGTTGTAGTGGGTCCTCTGCAGGAAGTCTTACTGGGTGGCCCTGAAGATGTAAACATTTTGAAGAACAGGGACTGGAGTCTTAACCATCAGACCAGGCAGAACTGCTTTGGCGGCTCCACGTCTCAGTTCTGACTCAGACTCTTCTCTCTGCCACAG
Seq C2 exon
AACCAAAGCCAGAACTCCACCTCTGTCCTTTCTGCCCTCCGGATCTCTGCAGTCAGAAATTCCACATGCAGCAGGTGCTGTGTAGTCCCCCACCCTGGATCTTCACGTGCCTGTATGCCGAAGATCCCGTCCAGCCAGGAGACCTGTGCCTGGAGGACCAGCAGCAGCAGGCCGCTGGTGGTAGTGCCTGGATCGAGGAAGTGGAAGGGCAGGAGGGAGAAGGTGCCCGGCCTTTGTTTGGAAAGACAGAGAAAAGTACTGTAGAAGCATTCCCCAGGCCACCCCAGAGGCAGCCAGTCATCTCTGGGGGTGGGGTCCCAGGTATGGAGATAGAGGCCGGCCCTGCACAAATGGGGACCCCTGAGGAAACAGACAGGCTGTTGAAGAGGATCGAAGTCCTGGGGTTTGGGACTGTCAACTGTGGAGAGTGTGGACTGGGTTTCAGCAAGATGACGAACCTGCTCAGTCACCAGAGGATCCACTCCGGGGAGAAGCCCTACGTGTGTGGGGTGTGTGGGAAGGGCTTCAGTCTAAAGAAGAGCCTGGCCAGACACCAGAAAGCGCACTCCGGGGAGAAGCCCCTCGTGTGCGGGGAGTGTGGGCGGGGCTTTAACCGGAAGTCGACGCTCATCATACACGAGAGGACACACTCCGGCGAGAAGCCGTACATGTGCGGTGAGTGCGGGCGAGGCTTCAGCCAGAAGTCGAACCTCATCATCCACCAGAGGACACACTCTGGGGAGAAGCCCTACGTGTGCCAGGAGTGCGGGAAAGGCTTCAGCCAGAAGTCAGCCGTCGTCAGGCACCGAAGGACACACCTGGAGGAGAAGACCATCGTGTGCGGCGACTGCGGGCTGGGCTTCAGCGACAGGTCGAACCTCATCTCGCACCAGAGGACACACTCAGGGGAGAAGCCGTATGCCTGCAAGGAGTGTGGGCGCTGCTTCCGGCAGAGGTCCACACTCGTCAACCACCAGAGGACACACTCGAAGGAGAAGCCTTACGTGTGTGGCGTGTGCGGACACAGATTCAGCCAGAATTCAACCCTCATCTCGCACAGGCGCACACACACTGGGGAGAAGCCTTACGTGTGTGGGGTGTGTGGGCGGGGCTTCAGTCTCAAGTCCCATCTCAATAGGCACCAGAACACGCACTCCGGGCACAAGCCCATCGTGTGCAAGGACTGCGGGCGTGTCTTCAGCCAGCAGTCCAACCTCATCCGACACCAGAGGACGCACTCGGGGGAGAAGCCCCTGGTGTGTGCGGAGTGCGGGCGAGGCTTCAGCCAGAAGTCCAACCTTGTGGCACACCAGAGGACGCACTCTGGGGAGAAGCCGTATGTGTGCAGGGAGTGTGGGCGGGGCTTCCGCCACCAGTCGGGCCTCATCCGGCACCGCCGCACACACACAAGGGAGCAGCCGTACAACTGCCGGCTGTGCGGGCGAGGCTTCGGCAACAAGTCCGCCCTGCTCATGCACAAGTGGTCACACTTGGAAGAGAACTCCTGTCTGTGCACAGAGTGTGGCCAAGGCTTTCCCCACAAGTCACACCTCATCCTCCACCAGATGACACACCAGGGGAGGACGCCGCACGTGTGCAAGGCATGCGGGCAAGGCTTCAGCCAGAAGTGCCACCTCAGCAGACATAGGAGGAATGTGTGCCCACCACAGACCACTGTTTCAGTCTGACCCCGAGGCCCCGCGGGAGCATCCTTACTGACCCCCTCACCCGCTCCAAGAGCGCAGACTAAATCAAAACATTTTACGGTCTTCTTGAAAACGCATTCCCTAAGCGGTCAAAAAGACATTTGAACTCAGTTTACTTCCTCTACCCCAAGTTGTCGTGTTTGGGGCATTTTGTTCTAATAAAACTCTGCTGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004620:ENSBTAT00000039401:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development