RnoINT0167766 @ rn6
Intron Retention
Gene
ENSRNOG00000027955 | Zfp133
Description
zinc finger protein 133 [Source:RGD Symbol;Acc:1566283]
Coordinates
chr3:138610573-138616131:+
Coord C1 exon
chr3:138610573-138610668
Coord A exon
chr3:138610669-138614261
Coord C2 exon
chr3:138614262-138616131
Length
3593 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTCACTCTTTCCTCTGCAGCAC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GAATTCCATTTTCAAAACCAAAGCTCATCACCCAGCTAGAGCAAGGGAAAGAGACATGGCGAGAGGAGAGAAAATGTCCACAGGTTGCTTGTCCAG
Seq A exon
GTGAGTGGCAAAGGTCTGGGCAAACAGGACACATTTAGTGGCCCAGGAGGCTGAAGAGAAGAGGTAGTGATGAGGAACTGGAGTTCTCTTTGACCCTTTTGGCCACTCTTGCATGCTACTGTCTCTATATAGGAGTATTCCTGGTGTCTCTTCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCTCAACATACTACTCTACACCTTCCTACATAATATATTATCATAACCCATTAAACATCCTCCCCATCCATCATCTTATTACTAGCATTTAAAATCATATACTCCTTAACCATCATCATGATCCTTACTCACATAACCATCTCTCCAACCACCTCTTTTATCCTCTTCAATAACAACTACTTCTGTCACCATCTTCTACCTCACAAACACTGTCATCATAATCCACATCTACCACCACTGTCTACGTTCTTAAAATTATCACTACCATCAATACTCCTTAAATCCTGTACAACAATAACTCCAGGAGGACCCTGTGATCCAAGAACCATAACTGGAGCCACTTGTCCGAGTGACACGCCCTGGTGCCCAATTAAATCTCAAACGACATGTCCGCGAAGGCACACATAATAGCACGAATACCCAGTCTCTCAATCTACTTATTTTTATTTTAATGAGTACACTGTAGCTGCCTTCAGAAGAGGGTATCGGATCCCATTACAGATGGTCGTGAGCCACCATGTGGTTGCTGGCATTTGAACTGAGGACCTCTGGAAGAGCAGTCAGGATTCTTAATCACTGAGCCATCTCTCCAGCCCCCTCTTGTCTCCTTTTCCTTGAAGACTTTTTGGTCTCCTGCTGCTGCCTCCTGAGTGCTGGGATTAAAGTCATAGCTACCATGCCTGGCTGCGTTTTTGAAATTTAAACTTATATCAATATTCATTAAATCTGTGTAAACTATAAATACAGGAGCACCTGTAGATTTAAGACACTTTACAGACTAATTTATCCAATTGACCATAGTTTGTGTTCAATCTGATCTCAGACGAAGTGGTCCCGAGTGTACACAGAATGGCAGATTCGCAGTCAGTGGAAAGGATCCTCGTGTAGGAAGTTGAAATTTTGTTTTCATTTTTTCTGTCAGTCCCCTGTAGATGTGTAAACAATGTTGGGATTGCTTTGAAGAGGCCATTTTAATTCTTAATTATATTGGCTGCAAATAAAAGCTACTTTGTATCTACCCACAGAAATTAGAAGACACAAGTTGGTGGCCAGAAACAAAATAAGAGTTGTGCCACACCATAGATTACACAGAATAAAGTTGGTAAAAGCTACCAGGCTTCAGATACACCCCAGGAACAGGCCTGAGGTCCTGTGCTGACCTGGTCAGGGCAGTCTGTAGTAGTGGAACTTGGGAGGGATGGACATCAGTGACTCCCAGACTGTCATCCACACCCGCAGTCACAACCTGCTGACAGGAAAGAATTGTACCGAGGTGCTAGAGAGATGACCCAACAAGGCTCCAGCTGCATGTATAGCAGAGGATGGCCTCATCTGGCATTAATGGGAGGAGAGGTCCTGTGAAGGCTCAATGCTCCAGTGTAGGGAAATGTCAGAGTGGTGAGGTGAGAGTGGTGGGTTGGTTGGGGAGCACCCTCATAGAAGCAGGGGAAAGAGGAGTTGGGGAGGAGGTTTTCGGAGGGGAAACTGGGAAAGGGGATAATATTTGAAATGTAAATAAATAAAATAGCCAATTAAAAAAAAAAAAAAGAGTTGCTCTTGGTAAGGATCCAGGTTCAATTCTCAGTACCACATGGCGGCACACAATCACTGAACTCTACAGACAACAGGCACCCATGTGGAACATATACATGTGTGCACACAAAGCATTCATACATGTACAATTTAATTAAAAAAGAATTTCACTGTTACTTATGGGACATTGCAGGATAAAATGGAAGGTGTTTGTTTAGTAGTCTGTCATGTAGGAAGAGTTAGGGACTTTCAATGTTAGGAAAGGGTGGTTATGCTTACTTTAATAATTAAGACAATTATACTAATTATGCTAATTCAATTATAACTGAAAATTGCATTCGACATAGGGTAGGATAATGTAATTCTGATAGCTGTGATGGTTCATCGGTTAGGAAGATTCAGTAGGATCTGTACTAATTGATCACACTGGTTGGGCATTGCCTTCAGCTGGCAGTAATAAAGCTACATTGTGGTAACCCTTGTTGGCCAAGAGGAACAACACAGAGAATGATTTTCTGGGTTTTGTTTTTGTTTCCTTTTTAATTTTCAACTGTCATTTGATGTTTGTTGCTTTGGTATTCCAGGGCCTATAATTATGGAAATTAACAAATCCCTTCTTGGTCATGAACTATGTCCCTGCAGTTAGACCCATCTTGAGGGTTTCTGTGTTGCCTCCTGATCAGGGTGTGCTGCAGTTTTGTTTTTGTAAATAAGCTCTTGCTGTGTAGTACAGCTGGCCTACCAGTCTTTCCTCTCTCCCTGTTTCCCCTCACTTTTTCTGCCTGCTTTCTCCCCACCCCCTTCCAGTCCTCCTGTGGTTCTAGGGATCTCCCTGTGGTTCTAGGGATCAAACCCGAGGCTTTGTGTGAGCTAGGTAAGCACTTGACCACTCAGCCATATTTCTAGCCCTTGGGTGGGTGGGTTGGTTGGTTGGTTTGCACTGAATTCTGAGGAAATTTTTATTTAAACTTGTGGAAATTAACAGGACTTAGTAGTAAGGGGCATGATTTATGGAACTAGTGACCCAGGCTGTGGTTGTGCTATTCCCTGCCGAGGGCCTTATAGAAAGTCTAACAAAGTAACCCACTGATAAAGTATTTGTCAAAGTGGGGAGACCTCAGATGAAGTACGTCATGTACTTTCTGTTTAACCATTGTCTCTTTTATAAAATATGTTTGTTGGAGGGGGCCATTCATGTGCTATGTGCACATGTGGAGGACAACTTGTGGCAGTAAGTTCTCTCCAGGTTTGATGGCAAGCATCTTGACTTGCCGCAAGATCTGGCTACCCCCTCTCCCCCGCCTTAACACTTTCCTATGCTGTCTTGTACTAAGGTTGGGATGATGCTTTCTCAGCCTGGCTGCTTCATCCTCAGCAGCATCAGGAGACACATTTCCACACGGGTCAAAAGCACAGCTGCATAGTACACAGTGGACACAGTTTCTGACTGTGTGGTTGTGAGTCAGAGGTAATTGAAGTGGTGACTGTGTGGAGATGGGTATTGGTCTGCTTCACACCATCTGTTAACTGTGATGCTTTTAAGAGCCTCAAGGCTATAGGTTAAGCTTAACAGGATGTAGCAGGAGATGCAAGATGTAGTGATGGGCTGGAGAGGAATCCATGTGAAGGAAGTCTTGGTGAGGTAGCATGAAGAACAGGATCACCATTGGGTTAGGTAGGAGTTTGGGCTGCCCTGCAAGGACTCCATTCTGACTCACTCTTTCCTCTGCAG
Seq C2 exon
CACAGGCAAAGCTGGAACTCTGCCCTGGTCATGTGTGCCCTCCAGATCTTACCAATCAGAAATCCCCTGTGCAGCACGTGCTAAGTCATCATGCCCCATTGATATTTACATGCCTGTGTGCGGAAAGTCATGTTGACCGAGGGGACTCCTGTCAGGGGGCCCTGGAAAAGCAGCATCAAGCCTCTGATAAGAATTCCTGCAGAGATAAATCAGAAGGTGGAGAGAGAGAAAGCGCAAGGCCTTCATCTGGAAGGACAAAGAAAGGGAGTTTGGGAGCCCTCTCTAGGCCACCCCAAGGGCAGCCAGTCAACTCTCCCAATGGCATCAGATGGGTAGAGATGGAGACCAGCCCAGCTCAAGCCAGGAGCACTGAGGAACCAGAGAAGTTGCTGAAAGGAATAGAAATCTTGGAATTTGGAACGGTTAACTGTGAAGAGTGTGGGCTGGGCTTCAGCAAGATGACAAACCTGCTTAGTCACCAGAGGATCCACTCAGGAGAGAAGCCGTATGTGTGTGGGGTGTGTGAGAAGGGCTTCAGTCTAAAGAAGAGCTTAGCCAGACACCAGAAGGCACACTCTGGGGAAAAACCCATTGTGTGCAAGGAGTGTTGGCGAGGTTTTAGCCGGAAGTCAACACTCATCATTCATGAGAGGACACACTCGGGTGAGAAGCCTTACATGTGTAGTGAGTGTGGACGAGGCTTTAGCCAGAAGTCAAACCTCATCATCCATCAAAGAACACATTCAGGGGAGAAGCCTTATGTGTGCAGGGAGTGTGGTAAAGGCTTTAGCCAGAAATCAGCTGTTGTTAGACACGAGAGTACACACCTAGAGGAGAAGACTTTTTTGTGCAGTGACTGTGGCCTTGGCTTCAGTGACAGGTCCAACTTCATCTCCCACCAACGGACACACTCTGGGGAAAAGCCGTATGCTTGCAAGGAATGTGGGCAGTGCTTCAGGCAGAGGACAACCCTTGTCAACCACCAGAGGACTCACTCAAAGGAGAAGCCTTATGTGTGTGGTATATGTGGGCACAGCTTTAGCCAGAATTCAACTCTCATCTCTCACAGGAGGATGCACACTGGGGAGAAACCATATGTGTGTGGGGTATGCGGACGAGGCTTTAGTTTAAAATCCCACCTCAACAGACACCAGAACATTCACTCAGGGGAGAAACCTATTGTATGCAAGGATTGTGGTCGAGGCTTCAGCCAGCAGTCGAATCTCATCAGACACCAGAGGACACACTCTGGAGAGAAGCCCATAGTGTGTGAGGAATGTGGTCGAGGCTTCAGCCAGAAGTCAAACCTTATCGCACACCAGAGGACACACTCAGGAGAAAAGCCACGTGTGTGCTGAGACTGTCACCAGGCTGGGCTCATCAGACACAAGAGGAAGCATTCAAGGGAGAGACCATATGCGTGCAGGCAGCGTGGACTAAGCTTTAATAATTGCTCAGCTTTAATCGCACATAAGCAGGTACATTTTGAAGAGAAGCTTAGTGTGTGCAGAGAGTGTGGCCAAGTCTTTATCCAGAAGTCACGCCTCACCTTACATCAGATGACACACAAGGGGGAGAAGACTTATACATGCAAGACCTGTGGACAAGGCTTTAGGCAGACACAGGAAGATGAAATGTGCCCACCGCAAACTGCCCTTCCAGCCTGACTCTGAAGCCTATTTGGGGTGATCTTCTGACCCCTTGTGTTCTCTCTGAAAACGGAAATGGTGGAAAGCATTCACTGGCAGAATTCTTAAACTTCTACGAAGTAGAAAAATGCACTCTGTAAGACCAAAGGACAGTAACTACTTCCTTTCCAGTCTCATGTATGGCCTTTTGTCTAGTAAACTTTGCTTCTTTACAAATTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027955:ENSRNOT00000031623:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.3),PF0009621=zf-C2H2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]