BtaINT0164981 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011498 | ZNF184
Description
Bos taurus zinc finger protein 184 (ZNF184), mRNA. [Source:RefSeq mRNA;Acc:NM_001100372]
Coordinates
chr23:30973977-30980070:+
Coord C1 exon
chr23:30973977-30974072
Coord A exon
chr23:30974073-30977702
Coord C2 exon
chr23:30977703-30980070
Length
3630 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ACATTTTCTTTTTCTTTCAGACT
3' ss Score
10.99
Exon sequences
Seq C1 exon
GACTCCAAGTTTCCAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCGTGGATTGTGGAGCCCAGCATCCCAGTAGGGACCCCTGGAG
Seq A exon
GTAAGTAGTGGGTACCCAGCAGATGAATGTTATTAACTCTGACCACCAGCCTGATGAGAGGATTTTACACCTGAAATGTAAATGTACTTGCTTCTCCTTAAAGTGTCTGTTGGGAAGGCATTTGTACTTTCTTATGTGTTGTCAAAACACCAAATGTCTCAACATGTGAATACATATACATTTTTATGCTCCTTTCAGAGGACGTGTCCTTCCTGCTCTTTTCTAAAAGCAACTTCTTGACATGGAATCTGGATTCTATCCTTTCCCAACCTCCTTTGGGACCCAAGTCTTATAATTATTAGTACTTTTCAGTCCTTAAAGTTTTCTTTTTGGATCTCTAGGCTCCATTCCCATAACCTTCAAACAGAAATAGGTACCTAAATTCCAGATACTTTTACTCAACGCTGTTAATCTATCTGGCCACCATCCGGTCTGCCTTTTTGCTTTCCCAACCAAACTCTGCTAAAGTGAGTTCCATACCTGTAGACATCATTTTTTTTCATACCTAGTCCTGCCTTAATCTCATTGTGTAGCTTCTTATCCTACACAGTATTGTCTTGTCCTTGACATTATGAATAACTTTCTTCTAAACCTTGATTCTTAAATGGCACAGAGAGACCTCTTCAAAGATCTGACCCTGAAAAAATATAGAAACTAAGACACTTTAGGTAAGGAATATATCTTCAAAAGTAATGAGGTAGACATGGGGGTCCTTTTTAATGGGGAGAAAAAAAGCATGCAGTGTTCAAATTTGGGAAGTGCTGAATTAGCTAAATTTTAGCAGGTTTCATTCTCTTTTTTTTTGGCTGTGCAGGGTCTTTGTTGCAGACCACCATTGCGGTGTTGGCTTGTGGACTCTGGAGCATGGGCTCAGTAGTTGTGTCACATGGGCTTACTTGGTTCATAGCATGTGGGATCTTCCCAGACCAGGGAGCCAACCCATGTCCCCTGTATAAGCAGGTGGATTCTTATCCATTGTGCCACCAGGGAAGTCCTTTAGCAGGTTTCTTATTGGAGAACCACTTAGAGATTTTTTTTTCTTTTACATAGTCGAGAATTATGAATTTCTAAGAGTTGCATAGAATGTAACATTTCTCTCCCCCATCCTCCTAACCATGATTCTGGTTTGTTTTTTTTATACTGCACCTTTAAAATCTTGCTTTTAAAAGATGGTTTCATGGAACACAACTTGAAAAACTAATTTTTTAAAAATAAGAGCTTTATTAACTTATGTTTACAGTTTGTTAACTTTTGGAAAGTTAACAATGAGGTGGCCACTGGCCCAAGCCCTTGTCTGCATCATTTTCCTGTCTTCTTTATTACCATCTTCTCTAGGCTGTCTTGGTGACTTGGCCCCCGCCGGATTGTGAGAGAGAGAGAGAGATATATATATATATATTTATTTACCTACCTATCTGTGTATACACACACACACACACACACACATATTTTGTCTTGCTAGTCTATCTTGTTCTTTTGCAGCCTGAATGTTAGCACCCTCTATTATCTCTCCAGGCACAGGATGTCAGAATATACTGTGGTCATTGCCCGTTGATTTTGCATACTGTATAGTAAAGTGAAAATTGCTTCCTGCAGTAGGAGTGGTACTGTTCAGTCTGGCCTTCTGGAATTTTCTCCAATCTTTCATTCATAAACCCACTCCTGATACTCTGGTTACTCTCTTGGTTAGTGCATGGACAGTATGACAATGTGGATAATATTGGTCAGTCTGTTGCATGTTTATTGCTTTCATCTGGAACTCCAACCTGGCTCAAGATCAGTCACTTCTACACTCTTTTTGCCTTTAACAGCATATGACTCTATGGTCTCCATATCCTTCCCTGTGAAGTACTTCCAGGAGATAATTTTTATGGTTATCTACTGCACAAGTAGATAACAACAACAAGGGCTTCCCTAGTGGCTCAGATGGTAAAGCATCTGTCTGCAATACAGGAGACCCGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAGCCCACTCCAGTACTCTTGCCTGGAAAATCCCGTGGACCGCGGAGCCTGGTAGGTTACCGTCCATGGGGTCACAAAGAAACAGACATGACTGAGCGACTTCACTTTCACTGTACAAGTAGTAGTTCCCTTGTGGTTCAGCTCATAAAGAATCCGCCTGGAATGTGGGAGACCTGGGTTTGATCCCTGGGTTGGGAGGATCCCCCGGAGAAGGGAAAGGCTATCCACTTCAGTATTCTGGCCTGGAGAATTCCATGGACTGTTTAGTCCATGGGGTCGCAAAGAGTCAGACACGACTGAGTACCTTTCACTCACTATACAAATATATCCTTCTTAGTGTCAGTTTTGTTGTGGGAAACATATCCATTTCTTATATTGATTGGTTGTTCCCCCCCAAACTTGTTTTGCATTAATCTTCTTGTCCCTGCTAGAGAAATATTGCTGTTAAGAGGCTGCCTGCCCTTCTACATGCTGGTAGGTGCTACACCATTACCCATGGTTCCAGGTATGGAGGGGATGGTAGGCAGCTCTGGCTCCCTGCCTTGCTCCTCATGCTACAGTGATAATGGTGATGATCACAGCTGGGCTGGTAGCACAGGTGATTCAGGGTTTGCTGGGGGTCTGCTGTACCTTCCTGTTACCAGTGGAACCAAAGAAATGCTGTTTTAAATACAGCCTTTTTTTCTTTACTAGATCTGCCAACACTGACTACCCTGTCGTCTTTCTTGTCTTGACACAAGATAAACTGTCCCACAGTAGACAGCATAATAGTGTAACTCTACTTCCTGATTATGTACTTTTCTGGTTTTTTATATTCTTTTGCTTGTTTGCTGAAAACTGCTTTCTTTCATTAGTATATTTTATTCATCCATTATACTAAACACACTCAAGAATCTTTCCTTATCACTGTTCTTTTTTCACATACATTCTTACATCTTTAGCTATTCTTTTCCTTCCTTTTTTGAGCTGATAGTTTCTATCCTATATTTGAACATTTTAGTTATTCTGCTACTTTTGGCATCTTCCATCCCCTCAAACACCATTATCGTCTAGTCCTCCTTTTCTCTTATTCTCAAAATGCCTAGGGTTGACGTTGTCATCTTCCTCCACCTAAATTATTTTCTTTACTATTTACAACTTTCTCATTTCTAGCAGTGATACAGCTACTCCTTCAGTTTTCTAGGCTATAAACCATGGAGCCCAAGTCATATCTTCTGTTTGTCTTATCTTGAAATCATGCTTCTTAGATTTTTGTTTTGTTGTTCACTGGCAAGGAATCCCTGTTCAGACTGCCCTTTTTAGATCCAGTCCATCTTGTCTACTTAGCTATGTCTGTGGTCACTTTCTAAATTTACTGTCACCTTAAATGAAGTTCCCTTCCTGGTAGAGATTATCTGTGAAATTAAATTAGGCAGTCTCTTGCTGCTCTCATATTTTATTTATCATTCTCCTTACCTCTTTCTAAATGTCTCCCCAAAAAATAGGGCTGTATTTGAAAGTTCTCAGAATTCCCTGAGGGCTTTATTTTTAGTTTCATTAGGTCATCCCCACAGTAACACTTTTGTTGTTGTATTTGTTTTTTTTCCCTCGATTCAGAGTATGCTGACATTTTCTTTTTCTTTCAG
Seq C2 exon
ACTGGGTGACAAGACCAGAAAATAGCATAACAGCCTCAGAGCTGGACATTTCTGGAGAAGAGCCGTCTCCAGGGGCAGTAGCAGAAAAGCACAAAAGGGATGATCCTTGGAGCACCAACTTCTTAGAAACTTGTGAATCCAAAGGCAGTCCAGAGAGGCAGCAGGCAAACAAACAGACACTGCCAAGGGAAATAAAAATAACTGAAAAGACCATACCAACTTTGGAGCAAGCACATGTAAATAATGACTTTGAAAAAAGCATCAGTGTGAGTTTAGACCTTTTAACACACAAACAAATATCTCCAAAACAGACCTCTACTAAAACAAATGTCAAACAGAATTTAAACCCAGTTAAAAAAGAGAAGTCTTGTAAGTGCAATGAATGTGGAAAAGCTTTTACTTATTGTTCAGCTCTTATTCGCCATCAGAGAACGCATACTGGAGAAAAACCCTACAAATGTAATGAATGTGAAAAAGCCTTCAGCCGGAGTGAAAACCTTATAAACCATCAAAGAATTCATACTGGAGATAAACCATATAAATGTGATCAGTGCGGGAAAGGCTTCATTGAGGGTCCATCTCTTACTCAACATCAAAGAATTCACACTGGAGAAAAACCCTATAAGTGTGATGAATGTGGGAAAGCTTTTAGTCAGAGAACCCACCTTGTTCAGCATCAGAGAATACACACTGGTGAGAAACCATATACTTGTAATGAGTGTGGAAAAGCCTTTAGCCAGAGAGGCCACTTCATGGAACATCAGAAAATCCATACAGGAGAAAAACCTTTTAAATGCGACGAATGTGATAAAACATTTACCAGGAGCACACACCTTACTCAACATCAAAAAATCCATACTGGAGAGAAAACCTATAAATGTAATGAATGTGGAAAGGCTTTCAATGGACCCTCAACGTTTATTCGTCATCATATGATTCATACTGGGGAAAAACCATATGAGTGCAATGAATGTGGTAAAGCCTTCAGTCAGCACTCAAACCTCACTCAGCATCAGAAAACACATACTGGGGAGAAACCTTATGATTGTGCTGAGTGTGGGAAATCCTTTAGTTATTGGTCATCCCTTGCTCAACATCTCAAAATTCATACTGGAGAAAAACCTTACAAATGCAATGAATGTGGAAAGGCCTTCAGTTACTGCTCATCCCTTACTCAACATCGGAGAATTCACACCAGAGAAAAGCCTTTTGAATGCAGTGAATGTGGAAAGGCTTTCAGTTATCTCTCAAACCTTAATCAACATCAGAAAACTCATACCCAAGAGAAAGCTTATGAATGTAAGGAATGTGGGAAGGCCTTTATTCGAAGTTCATCTCTTGCTAAACATGAAAGGATTCATACTGGTGAGAAACCCTATCAGTGTCATGAATGTGGGAAAACCTTCAGTTACGGCTCATCCCTTATTCAGCATAGGAAAATACATACTGGAGAAAGACCTTACAAGTGTAATGAATGTGGGCGAGCCTTCAACCAGAACATACACCTTACACAGCATAAGAGAATTCACACGGGAGCAAAGCCTTATGAGTGTGCCGAGTGTGGCAAAGCCTTTCGACATTGTTCATCTCTTGCTCAACATCAAAAAACACACACAGAAGAAAAACCCTACCATTGTAATAAGTGTGAAAAGGCCTTTAGCCAGAGCTCCCATCTGGCACAGCATCAACGAATTCACACTGGAGAGAAGCCCTATAAGTGCAATGAATGTGACAAAACCTTTAGCCGGAGCACTCATCTGACTGAACATCAGAATACTCATACTGGAGAGAAACCTTACAACTGTAATGAATGCAGGAAGACTTTCAGCCAGAGCACTTACCTCATTCAGCATCAGAGGATTCATTCAGCAGAGAAGCCTTTTGGATGTAATGATTGTGGAAAAGCCTTCAGATACCGTTCTGCTCTCAACAAACATCAGAGACTGCACCCTGGCATATGACTCTTCTAGGATCATCCTAAACATAGGGGATGCATTTATTCGGGGATACATTTACTCTGGTTTGTCCTTTTGTTCAACACAGAAGAATCAGGCTGGATTGAGAAACTGCTGAAAATACTTCTACTTTTCACTGTTGTGCTGTGGAATAGAAAGTGCATTGGGCTGAAATAATCCGATTATGTTGTTAAGCAATTTTGTGACATTGGCAAATTCAGCCATTTTAAGCTTCAGTTTCCTCTGTGAACTGAGGGATTTGGAGTAGGTCATTTCAAAGGTCATTTATTCAGTTTTGTATGTTTACAATATATTCTTGAATAGGATTATTATACATCAGCATTTTGCTTTGTTGCTTCTAGAGTATATGTATTTATGCATGTTTTGCTAATAGAAAGCATTTATGTTTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011498:ENSBTAT00000015283:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.228
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]