HsaINT0186346 @ hg19
Intron Retention
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:12975]
Coordinates
chr6:27418521-27424700:-
Coord C1 exon
chr6:27424605-27424700
Coord A exon
chr6:27421040-27424604
Coord C2 exon
chr6:27418521-27421039
Length
3565 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GAATTTTCTTTTTCTTTTAGACT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GACTCCAAGTTTCTAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCATGGATCATGGAGCCAAGCATTCCAGTAGGTACCTGTGCAG
Seq A exon
GTAAGTCATGGATGCCAGCAGATGAATATCATTAACTCCGACTGTCAGCCTGATAAGAGAGGATTTTATGTCTGAAGTGTAGATGTACTTTCTTCCCTTTAAAGTATTTCCTGTGGAGAAATGGGAAAACATCTGTTTTCTGGACTTTCTTATGCTTTGTTATGTCACTAATTGTTGCAATATATATTCTATGTTATGCCCCTTTTTGAGGAGATGTCCTTCCTACCTTTCTATGAAATCCACCTCTCGAACTGGACTCTGAATTACATCTCTTTCTACTTCCTTTAGGACCATGATCTCATAATTATCACCGTACTTTTCAGTCCTTACAATTTTTTATTTTGGATCTACGGGCTCCATTCCCAGTACTTTTAAATAGAAATACATAACCTATATTTCCAAATAGATTTACTCCACAATATGAATCTTTATGGCCACCATTCAGTTTATCTTTTCTTTCCCAAGCAAACTCAACAAAAATGAATTCCATAACTGCAGGCTTCGTTTCTTTATCACCTAATTCTTACCTAGTAACATGTATAGCTTCTGATTTTTTTTTTCTTTTTTTGAAACAAAGTCTCATTCTGTTGCCCAGGCTGTAGTGCAGTGGCGTAATCTTGGCTCACTGCAGCTTCTGCTTCCCAGGCTTGAGTAATCCTCCCACCTCAGTCTCCCGAGTAGCTGGAACTACAGGTGCACGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTGGAGACACGGTTTCGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCTACCCGCCTCAGCGTCTCAAAGTGCTGCAATTACAGGTGTGAGCCACTGCACCTAGCTAGCTTCTGATTTTATCACTTCATCATACAGTTTTTGAAATTATGAATAACTTTCTTCTAAATCATCAGTTTCCAAACTGCATGAAGTAACCTAAGGATCTGACCCTGGAAAAACAAACAAACCTAGTCATTCTAGGTAAGCGATACGTCTCTAGAGTTAATGGGATGTAGGTGAGGTTCTTCTTTACGGGGGAAAAATGTATGCCATGTTCAAACTTTAGCAAGTTTCTAACTGGAGTACCACTCAGAGATTTTTTTTTTAAATAGGCAGTTAGGTGTTATGAATGCTCAACAGGGTTGCATAGAATGTAACATCTCCCAACCCCCGCCCTGCCTCCAACAATGAATACTTTTTTTTCATATCACATCTGTAAAATCTTTCTCTTAGAATGGTTTCATGGAACATACTTTAGAAAGCTTAATTAAAAAAAAGAAGAAGAACTTTAATAACTGGGGCTTATGGTTAGTTAACTTTTGGAAAAAGCAAGTTGTCAAGTTTTATTACAAATTAAAAATGAAATTTTACTTGACCAGATAGAAAACCATTTTAAACCATTAAAATGTACATTGAAAAACTTAGGCTTTTCAAAAACTACTTTTTACCAGAAAGATTTATTTAGGCAAAAATAATAACCCCCACCCCCATGTTGCATAGATAATTTTTATAGTTCCACTTACCTGGTCAGTGAACAGAAGGCAAGCACTTGAGATATTTAGCTCCATTCTTTTGGTTACTTTTTATTGCTGGAATTTGACCTGATGATGATAGTCTTGGTAAATCAGCCCTCAAGTCTATCTTTATCAGCATCTAGAATAGATTTATTCTTAGCTGGTGAGTTGGCTGCTTTTGTCTTTATAAAAATGTCGTATAGTTTTGTAGATATCTTTACAGCTAGTGATATTGTGACAGTACCTATGTTGAGTTTGGCCACTAGCCCTGGGCCTAGTCTACCTAATTTCCCTCATCCTCTTTATTGCCATCTTCTCGGAGCTGTCTTGATGATCTTGACCCTCAGGATCATGATCTATAACCCTGATATGTATCTGTCTCACTGGTCTATCTTGTTTTCTTGTCCCCTGGTTGTCAACACCCTCGATTACTTCTCCACACATGGGACATCAGAATAGTATAGTCAATGTCTGTAGACTTTGTTTGTAGTAAAGGGAGAATTGCTTCTGCAATAGGGATGGTATTTTTCAATCTGGTCTTTGGGAACTTTCTCCATCCCTTCATTTTTTGCCCTGCCCCTTATATTCTAGTAATTCTGTTGGTTATTGAGTAGAGGACATGACAATATAGATAACATTGGCCATGGCCTGTTTCATGTTGCCTTTGAGTGGAACTCCAACCAGGGTTGGAGATCTGCCACTTCCATGCACTGTTCTTTAACAGCATCAGACTCCATGGTCTCCATATCTTTCATTGTGAAGTACTTCCAGAGGTATTCTTTATGGCTACCTGCTTTGCAAACATACCTTCCTTGGTGTCATTTCTGTTGATGAAAACATATTTATTTCTTGAACAATCGGCTGTTTCCAAACCCTGTATTGTATTGATGTCGTCCCTCCTGTAGAAATTCTACTGCTGTGAGGCTGCCTACACTAATACGTGCTGTGCTGTTACCTGTAGTGCCAGGTGTGGAGGGGATGCTAGGCAGCTCTGAGGTCTGCCGCACTGCTCATGCTTGCGGTGATAGTGGTAGTGGTAGTGATAGTGACTGGGCTTGCAATATGGGAAAGATTCAGGATCCTCTGGGGTCTGCTGTAAACTCCTGATACCATTGAATCTGTTCTTTAAGAATATTGCCAGCATTGACTACCCTGCTTCTTTTAGTTGTCATCTCTTTTGTTTTGGGCAACAGTTTACTTCCTGATTATGTACTTTCCTGGTTATGTTTCTTCTGTTGTTTTATGTGTTTGCTGATAAACTGCTTTCTTTCATTGGTATATTTTATTAATTCTGTTACCCTGACTATTCTCAAGGATCTTCCCTCTGCCTCTGCTCTTTTTCACATATATTTCTAAGGCTTTAGCTATTCTTGTCCTTCTTTTTTTGAGCTGATACTTTCCATCCTACATTTGAACATCCTTGTTATTCTGATGTTGGCATCTTTCACTTCCACAAACGCTACTATAGTCCAGCTCTCCATTTCTTTTCTTAATTCTCAAAATGCCTAGACTTGAACTTGTTAGTTTCTCCCTGCTAAATTATTTCTCTACTATTTACAACTCTTCCCATATCTAGCAATGATGTGATTATTTCTTCAGTGTTCCAGGCTGAAACACATGGGGTCTTAGCTAATAAATCTTTCCTGTTTGTTCTGTCTTTAAATCATGGTTCTTGGATTTTTTGTTTTGTTGTTTATTAGCAAGGAATCCCAATTCAAACTGCCCCCTTCAGATTCAGTTCATCTCTGTCTACTCTTAGCCATCTCTGTTGTCACCTTTTTAGTCAACTATTACCTTAAATGTATTTCCTTACTGGTTCTTGAAGATTATCTATGAAATTGAATTAGACATTCTTTTGCCACTTTCGTATTTTATTTATAATTCTCCTTAGCTCCTTCCAACTTTCTCCCCAAATAATATGGCTATATATTTGAAAACCATTAGAATTTTCTGAGAGATTTATTTTTCAGTATCATTATATTATTCCCACAATAGCAGTTTATTTTTTCTCTATTCAGAGAACACTGGAATTTTCTTTTTCTTTTAG
Seq C2 exon
ACTGGGAGACAAGACTTGAAAATAGTGTGTCAGCCCCAGAGCCTGACATTTCTGAAGAAGAGCTATCTCCAGAGGTAATAGTGGAAAAACACAAAAGAGATGATTCTTGGAGTTCCAACTTGCTAGAAAGTTGGGAATATGAAGGCAGTTTAGAGAGACAGCAGGCAAACCAACAGACACTGCCAAAGGAAATAAAGGTAACCGAAAAGACAATACCCAGTTGGGAAAAAGGCCCTGTAAATAATGAATTTGGGAAAAGTGTCAATGTGAGTTCAAACCTTGTAACACAAGAACCATCTCCAGAAGAGACCTCTACTAAAAGAAGCATCAAACAGAATTCAAACCCAGTTAAAAAAGAGAAATCTTGTAAGTGCAATGAATGTGGGAAAGCCTTTAGTTATTGTTCAGCTCTTATTCGCCATCAGAGAACACATACTGGAGAAAAACCCTACAAATGTAATGAATGTGAAAAAGCCTTCAGCCGGAGTGAAAACCTTATAAACCATCAAAGAATTCATACTGGAGATAAACCATATAAATGTGATCAGTGTGGAAAAGGCTTCATTGAGGGTCCATCTCTTACTCAACATCAAAGAATTCATACTGGAGAAAAACCATATAAATGTGATGAATGTGGGAAAGCCTTTAGTCAGAGGACCCATCTTGTTCAGCATCAGAGAATTCATACTGGCGAGAAGCCATACACTTGTAATGAGTGTGGAAAAGCCTTTAGCCAGAGAGGCCACTTTATGGAACATCAGAAAATTCATACGGGAGAAAAACCTTTTAAATGTGATGAATGTGATAAAACCTTCACCAGGAGCACACACCTTACTCAACATCAAAAAATTCATACTGGAGAAAAAACCTATAAATGTAATGAATGTGGAAAGGCCTTCAACGGGCCCTCAACTTTTATCCGTCATCATATGATTCATACTGGTGAAAAACCGTACGAATGCAATGAATGTGGGAAAGCCTTCAGCCAGCACTCAAACCTCACTCAGCATCAAAAAACTCATACTGGGGAGAAACCCTATGATTGTGCAGAATGTGGAAAATCTTTTAGTTACTGGTCATCCCTTGCTCAACACCTGAAAATTCATACTGGAGAAAAACCTTACAAATGCAATGAATGTGGAAAGGCCTTCAGTTACTGCTCATCCCTTACTCAACATCGGAGAATTCACACGAGAGAAAAGCCCTTTGAATGCAGTGAATGTGGAAAGGCTTTCAGTTATCTCTCAAACCTTAATCAGCATCAGAAAACTCATACTCAAGAGAAAGCTTATGAATGTAAAGAATGTGGGAAAGCTTTTATTCGGAGTTCATCTCTTGCTAAGCATGAAAGAATTCATACTGGAGAGAAACCCTATCAGTGTCATGAATGTGGGAAAACCTTCAGTTATGGTTCATCCCTTATTCAGCATAGGAAGATCCATACTGGAGAACGACCTTACAAGTGTAATGAGTGTGGGAGAGCATTCAACCAGAACATACACCTTACACAGCATAAGAGAATTCATACAGGAGCCAAGCCTTATGAGTGTGCTGAGTGTGGTAAAGCCTTTCGACATTGTTCATCTCTTGCTCAACATCAAAAAACTCACACAGAAGAAAAACCCTACCAGTGTAATAAATGTGAAAAGACCTTTAGCCAGAGCTCCCATCTAACTCAGCATCAACGAATTCACACTGGGGAGAAGCCCTATAAGTGCAATGAATGTGACAAAGCCTTTAGCCGGAGCACTCATCTGACTGAACATCAGAATACTCATACTGGAGAGAAACCTTATAACTGTAATGAATGCAGAAAGACTTTTAGCCAGAGCACATATCTCATTCAGCACCAGAGAATTCATTCAGGAGAGAAGCCTTTTGGATGTAATGATTGTGGAAAATCCTTCAGATATCGCTCTGCTCTCAACAAACATCAGAGACTGCATCCTGGCATATGACAATTCTAGGAACATCATAAATTTAGGGGAGATATTTACTTTAGTTTGTCCTTTTGTTAAGTACTGAAGAATCAGAGTGGATTTAGAAACTGCCTTGAAATCTTTTAAATTTTCACTATCATGTTATGGAATGGAAAGTACATTGGGCTGAACTAATCCAATTGTTATTAAGCCACTCTGTGACATTAGAAAACTCTACTGTTTTAAGCTTTAGTTTCCTTTATGGAATGAAGGATTTGGAGTAGATTATTTCAAAGGTAGTTTGGAGTTTTATAATCAGTTTTGTATATTTACAATATTTTCTTGAATGGGTTTACTATACATCAGCATTTTGCTGTGTTGCATCTAGAATGTGTATGTTTATGCATGTTTTGCCAATAGAATTTGTGCTTCAGTAACTAGATCGGGGATCTAGTATGCTCCTGGTCTAATGCATTTACATTGTTTAGGTAACTGGTTCCTAATAAAAAGAATTATAAAATACCCTCAAATTAACAATTCAATTGCATATAATAGCCTAACTCAGTAAGAATATTAAAACTTACTATTATTCTTCTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654-ZNF184:NM_007149:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)