BtaINT0165172 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14035500-14036098:-
Coord C1 exon
chrX:14035977-14036098
Coord A exon
chrX:14035536-14035976
Coord C2 exon
chrX:14035500-14035535
Length
441 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
AAAACTTTTTCTAATTTCAGTTC
3' ss Score
7
Exon sequences
Seq C1 exon
TAGGGGCATTACTCTAGTGTGCCTTAAATGTGATTTCCTGGCTGATTCTTCTACTCTGGATCGTATGGCTAAACACTTAAGTCAACGTAAAACTCACACTTGCCAAGTTATTATAGAGACTC
Seq A exon
GTAAGTATATATAATTGTGTTAACTTTAGATTTCTGATACTTATTCCAGTGGTTTTGATCAACCACAGAACAGGCTCTTAGATATTAATAGTTTCATTCCTCATACATTCTTTAAAAACATTTTATTTTATATTGAAGTATAGTTAATTTACAATGTTATATTAGTCTGGTGATTTAATTATATGTATATATACACATATATTATACATACACATATATAATTGATTTAATTATACATAAATAGATTCTTTTCATTACAGTTTATTGCAAGATATAAATATAGTTCCCAGTGCTATACAGTTGGAACCTTCTTCTTTATCTATTTTGTATATGGTAGTTTATATTTGCTAATCCCGAACTCCTAATTTATCCTTTCCCTCCCTTTCCCCTTCTCATTCCTCATATATTCTATTTTAAATGTAAAACTTTTTCTAATTTCAG
Seq C2 exon
TTCCTGAAGGTACCTCAGCTGTGAACCCATTTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885:ENSBTAT00000026492:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]