GgaINT0028086 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7119169-7119514:+
Coord C1 exon
chr10:7119169-7119287
Coord A exon
chr10:7119288-7119477
Coord C2 exon
chr10:7119478-7119514
Length
190 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCCTTTATTCTTATTTTCAGTTT
3' ss Score
9.44
Exon sequences
Seq C1 exon
AGGTGTGACTGTAGTATGTCTTAACTGTGATTTTCTGACTGATGGTTCTGGCTTAGATAGGATGGCCACACATCTGAGTGAAAGCCATACTCATGCTTGTCAAGTTATTATAGAGAATG
Seq A exon
GTGAGTATGTGTAGTTTTCTTCTTATATAGTACATGTACAAGTACTCACATGGGGATGTCTGTCTGTTATGGTGGTCTTTTTTCAATTACATTGTAATGTCTGTGTGCATAGATTTGAAAGTGAGTTCTTGTGTATTTCCACATTTTTTTAAGAAGTATTTCTAACTTAATCCTTTATTCTTATTTTCAG
Seq C2 exon
TTTCTGTAGATTTACCAACTGCTGAACAAGTATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGACTGTAGTATGTCTTAACT
R:
TCAGATACTTGTTCAGCAGTTGGT
Band lengths:
156-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]