RnoINT0167980 @ rn6
Intron Retention
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78925062-78925364:+
Coord C1 exon
chr8:78925062-78925180
Coord A exon
chr8:78925181-78925327
Coord C2 exon
chr8:78925328-78925364
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
AACTTTTCTTCTGATTTCAGTTT
3' ss Score
7.39
Exon sequences
Seq C1 exon
GGGCATTTCTCTAGTGTGCCTTAATTGTGATTTCCTAACTGACGTTTCTGGCTTAGATAATATGGCCACACACTTAAGTCAACATGAAACTCATACTTGCCAAGTTCTAGTAGAGAAAG
Seq A exon
GTACGTATACATAACTGCTGTTTCAGATATTTTGTATTAATCGTTATTTTTGGAAAGCCAAAATATGGTTTCTTTACTAAGTCATCTTATTTCACTAATCATTGTTCATATGCTTATGTAAATATGAAACTTTTCTTCTGATTTCAG
Seq C2 exon
TTTCTGTTTGTATCCCAACTTCTGAACGTCTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631:ENSRNOT00000089335:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATTTCTCTAGTGTGCCT
R:
CAGAAAGACGTTCAGAAGTTGGGA
Band lengths:
155-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]