BtaINT0165192 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53804525-53804830:+
Coord C1 exon
chr10:53804525-53804643
Coord A exon
chr10:53804644-53804793
Coord C2 exon
chr10:53804794-53804830
Length
150 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AACTTTTCTTCTAATTTCAGTTT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGGCATTACTCTAGTGTGCCTTAATTGTGACTTCCTAACTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAACATGAAACTCATGCTTGTCAAGTTGTAATAGAGAAAG
Seq A exon
GTATGTATATATAATTGTGTTACTTCAGATTTTTGCTATTTATTCTAGTATTTTTGGTCAGCCACAGTATGTTCTCTTTACTAAATCGTTTTTCTCACTCATCATATTTCATATGCTGTTTTAAATATAAAACTTTTCTTCTAATTTCAG
Seq C2 exon
TTTCTGTTTGTATCCCAACTTCTGAACATCTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486:ENSBTAT00000001949:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTACTCTAGTGTGCCTTAATTGT
R:
TCAGAAAGATGTTCAGAAGTTGGGA
Band lengths:
154-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development