HsaINT0186739 @ hg19
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56946396-56946701:-
Coord C1 exon
chr15:56946583-56946701
Coord A exon
chr15:56946433-56946582
Coord C2 exon
chr15:56946396-56946432
Length
150 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
AACTTTTCTTCTAATTTCAGTTT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGGCATTACTCTAGTGTGCCTTAATTGTGATTTCCTAAGTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAACATAAAACTCATACTTGCCAAGTTGTAATGCAGAAAG
Seq A exon
GTACGTATATGTAACTGTGCTACTTTAGATTTTTGACTTTTATTCCAGTATTTTTGGTCATCCACAATATGGTCTCTTTACTAAATCATTATTCTCACTCATCATATTTCATATGCTGTTGTAAATGTAAAACTTTTCTTCTAATTTCAG
Seq C2 exon
TTTCTGTTTGTATCCCAACTTCTGAGCACCTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-ZNF280D:NM_001002843:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTACTCTAGTGTGCCTTAATTGT
R:
TCAGAAAGGTGCTCAGAAGTTGG
Band lengths:
154-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)