GgaINT0028086 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:8661672-8662017:+
Coord C1 exon
chr10:8661672-8661790
Coord A exon
chr10:8661791-8661980
Coord C2 exon
chr10:8661981-8662017
Length
190 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCCTTTATTCTTATTTTCAGTTT
3' ss Score
9.44
Exon sequences
Seq C1 exon
AGGTGTGACTGTAGTATGTCTTAACTGTGATTTTCTGACTGATGGTTCTGGCTTAGATAGGATGGCCACACATCTGAGTGAAAGCCATACTCATGCTTGTCAAGTTATTATAGAGAATG
Seq A exon
GTGAGTATGTGTAGTTTTCTTCTTATATAGTACATGTACAAGTACTCACATGGGGATGTCTGTCTGTTATGGTGGTCTTTTTTCAATTACATTGTAATGTCTGTGTGCATAGATTTGAAAGTGAGTTCTTGTGTATTTCCACATTTTTTTAAGAAGTATTTTTAACTTAATCCTTTATTCTTATTTTCAG
Seq C2 exon
TTTCTGTAGATTTACCAACTGCTGAACAAGTATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGACTGTAGTATGTCTTAACT
R:
TCAGATACTTGTTCAGCAGTTGGT
Band lengths:
156-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]