RnoINT0167961 @ rn6
Intron Retention
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135372047-135372345:-
Coord C1 exon
chrX:135372227-135372345
Coord A exon
chrX:135372084-135372226
Coord C2 exon
chrX:135372047-135372083
Length
143 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
AAAGCCTTCTCTGATTTCAGTTA
3' ss Score
5.67
Exon sequences
Seq C1 exon
GGGCATCACTCTGGTGTGCCTTAAATGTGACTTCCTAGCCGATACTTCTGGCTTAGACCGTATGGCTAAACACTTAAATCAACGTAAAACTCATACTTGCCAAGTTGTAATAGAGAATG
Seq A exon
GTATGTACATGTGTCTGTTCCTTTGAATTTATGATTTTTGGGCCAGTAGTTTTTCTCTATCACAGTGTGAGCTCTTAAAAATTAAATTGATACACAGTCTTCATGTATTGCATTTGTAAACATAAAGCCTTCTCTGATTTCAG
Seq C2 exon
TTACTGAAAGAACCGGAACTTCTGAATCCACTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797:ENSRNOT00000044435:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACTCTGGTGTGCCTTA
R:
TCAGAAGTGGATTCAGAAGTTCCG
Band lengths:
154-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]