BtaINT0165232 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007012 | ZNF3
Description
Bos taurus zinc finger protein 3 (ZNF3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046614]
Coordinates
chr25:36908818-36910041:+
Coord C1 exon
chr25:36908818-36908954
Coord A exon
chr25:36908955-36909949
Coord C2 exon
chr25:36909950-36910041
Length
995 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
ACGGACCCTCTCGTCCTCAGCTC
3' ss Score
7.49
Exon sequences
Seq C1 exon
TGCTTCCACCTTCTCATACAAACCCTGCTTCCTGCTGACTCTGAAAATAGGAGACCAGAGATCCGAGCTTCTAGTACGACCCATGGAAACTCAGGCTGATCGAGTATCTCAGGAACCTCAGGCCTTGCTTGAGAGCG
Seq A exon
GTAAGGAATTTATCCTTTTATTCACTTACTCAGCAGATGCCCATTTAAATCGCTCATTCACCAGGTGCCGGGCTAACTGCTGGAATCCTGACTGGCGAGGACATAGTCTTTGCCTTTCACTAACTCCTAGCCTAGTGGGGAAGGCTGACTGAAGCCATTCATTAAGTCCAGCTTGATAGGGTTTATAGCTGAGGCATTTTTAAGGGCTGTGGGTTCCTCATGCAGCATTTAGAAAACTGTGACAATCACCAAACTCCCATTTTCCAGGTGCTTTGTAATAGCCCTGGTTTGTGCTCTTCTGGAGCATGTGCTTAGGGGAGCTCTGGGGAGTTATTTTGGAGATCACAGGCAAAAAGGGTAGAAGGAAGAGGAAGGGTGTGAAAAGTATTTGTATTTTGCTCTCACAGACTGCCACTGACTTTGGAGCCAGCTTGTGTCCAAGGAAGTATTATTCCCGTGCTTATCAAGAAAACGCATTTAAAACATTTTTATCTGCATGCTTCTACAGAATCTAGTATCTGCAGAGATTTAGTCTCTCAGGGACCAATATGTTAACTTAAGAATTACAGGAAAAGATACATAATCAAGCACAGAAACGGGAAACACTTACAGTGTGTAGATTTGATCTGGGGATCGAGAAAATAAGAGAAGAATCGTGGGCATTATGACTTGCTTCAGAGTTGGAGTGAAGCTAGCTTTCCTCTGGGTAAGAAGTCCAAGAGATTGAGTTGGAATGTGGAGAACGATGGAAGAGACACGAACAGGATAGCTGGTGCCTCCTGGGACAGACCAGAGAGCCAGGGTCAGCAGGGCTGTGGGCGTCTCTGCTCAGGCCACGAGGCCCACGCTGGCCGTGAGCACCTCTTCCAGTGGCAGAGGGAGTGAACTTAGAGATGCAGGAGTGGGGGTACTAGGTTGTCCTGGACCCAGGAGTTTCCGTAACGGGTGGAGAGGCTCAAGTGCAGAGCGACTCTCACGGACCCTCTCGTCCTCAG
Seq C2 exon
CTCTTCCTTCCTCAAAAGGCCCCACGTTTTCTGACAAGGGCGGTCTGGGGGATGAGATGCTGGCAGCTGCGCTCCTGAAGGCCAAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007012:ENSBTAT00000037194:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTTCTCATACAAACCCTGC
R:
GGGCCTTGGCCTTCAGGAG
Band lengths:
222-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]