HsaINT0186799 @ hg19
Intron Retention
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]
Coordinates
chr7:99673165-99675056:-
Coord C1 exon
chr7:99674926-99675056
Coord A exon
chr7:99673254-99674925
Coord C2 exon
chr7:99673165-99673253
Length
1672 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GCCCTTTTATTGCCCTTCAGCTC
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
Seq A exon
GTGAGGAATAAGGACTCATTCATTCTTTTACTCAGTCATTCTGCAATCATCCATTGAAATCGCTCACTTACCAGGTACTAGGCTAACTACTAGAATCCAGATGTGAATAAGACACACTCTTCGCCATTCAGTAACTCACAGCCTAGTGGGGAAGCTGACCGAACAGTAATCAATGACAGCTTGATAGGTTTGATAATTGAGGCAGATTGTTTTGTTTTGTTTTGTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCTCAGGCTAGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCATGTAGCTGGGACTGCAGGCGCCCGTCACCATGCCCGGCTAATTTTTGTAGAGACGGGGTTTTGCCATGTTGGTCAGGCTGGTCTTAAACTCCTGACCTCAGTGCCCACCTTGGCCTCCCAAAGTGTTGAAATTACAGGCATGACCCACCGCGCCTGGCCACTGAGGCAGTTTTGAGGGGTTGTGAGTACCTCACGCGAGATTAATGAAACCGTGTCAATCATTCCATTTCTCGGGCATTCTATGCAGCCGACTTCATAGGCATAGTTTGTGCTTTTTAGGAGCATGCTTTTAGAGGAGGCGCTTCGGAATCATTTTATGGGTCATAGACAAAAAGACAGAGTGAATAGGAAGCCACTAAAGTATACTTTGCGGCCGAGCGCGGTGGCTCACTTCTGTAATCCCAGCACTTAGGGAGGCTGAGGCGGGCAGATCACAAGGTCAGGAAATTGAGACCATCTTGGCCAACACAGTGAAACCGCATCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCACGCACCTGTAGTCCCAGCTCCTCCAGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACGCCACCTCAAAAAGAAAAAAAAAAAAGAATTGCAGAAAAAGGTAAGAGATTCAACACAGAAACAGGGAACATTTTTAGTGTACAGATTTGATCTGGGGTGGAGAGAAAGGAGCTGTGGGCATTGTGTTTCCAGTCAGGGCTGGGGTGAAGCTGCTGGTTTTTCTCTGGTCTAAGAACTTCATGCTGGGTGCAGTGGCACACGACTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAAACCCACCTCAAAAAAAAAAAAAATAGAACTTCATGCAAGAGCGGGATCATATGTTTCTGGCCAAGCTTGGGTGAATGGACAAGAATGCAGTAATCACTAAGATAGGACTGGGCGGTTTCATTGAGAGAAGAGTGACTGGAGAGAAGAGGGGACCTGGGACAGACTGGAGACTAAGAATGACCAGGCCTGTGGCCATCTGCTCAGGCAGGATGGACTCGCTCTGAGTTTGCCTTTGTTGGACACACTGTAGCTAGCTGCAGAGGAAGCAAACTTAGAAATGTGAGAGAGAGGGTCCTGTGTTGTCCCAGGACCCCGGGAGCTTTCTGTGGGTTGGGAAGTCAGCAGGTTGGGAGGTCACAGAGCAGATGGACTCATTCCTGGGCCCTTTTATTGCCCTTCAG
Seq C2 exon
CTCTTCCTTCAAAAGTTCCTGCCTTTTCCGACAAGGACAGCCTGGGGGATGAGATGTTGGCGGCTGCGCTCCTAAAGGCCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-ZNF3:NM_017715:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATTCTCTTTTAAAACCCGCT
R:
CTGGGACTTGGCCTTTAGGAG
Band lengths:
216-1888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)