RnoINT0167750 @ rn6
Intron Retention
Gene
ENSRNOG00000001341 | Zfp113
Description
zinc finger protein 3 [Source:RGD Symbol;Acc:6489147]
Coordinates
chr12:19292329-19294888:-
Coord C1 exon
chr12:19294834-19294888
Coord A exon
chr12:19292421-19294833
Coord C2 exon
chr12:19292329-19292420
Length
2413 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
GCCCTGGTATTGTCCTTCAGCTC
3' ss Score
8.04
Exon sequences
Seq C1 exon
ATGGAAACCCAGGCAGACCATGCATCTCAGGAACCCCGGCCCCTGTTAGAGAGCA
Seq A exon
GTAAGGCATGGGGTGGGGGTGGGGGGCATTCTCATCTCTTTCCGTTGTTTACTTGTGTTTTGTTTTGTTTTGTTTTGGAGACCGACCGGGTCTCACTTTGTTGCCGTGGCTGGCCACAGACTCAGTGTGTACACTAGGACGATCTGAATGTCAGAGATCTGCCTGCCTGTGTATCCTGACTGCTAGGATTAAAGGTGTGGACAGCACACTGGGCTTGCTTGTTTGATTTTGAGACAGAGTCTCACTATGTAGCCCAGGTGGCCTTGAATTTTCCATGTTCTTGTGTCTGGAGTGTTGGCCTTAAACATGTCTATTACCACGCTCTGCTCATTCTCCCACCTCCCCACCTCCCTCCCTCCCGTCCCTCACCTCCCTCTCCTACCCCTCTCCTCCCCCTCCAACCTCTCTTCTTTTTCTGAGGCGGGGTTTTGCTGTGTCAGCCTGCTACCCTATTGCTGTAGGGCTATATAGCCTGTAGACCAGGCACTTCCTGTAACTCCCAGAAATCCAACTACCTCTGCTCCCAGGTGTTGGATTAAAGGCATGTGGCATCACACCCAAACTAAAATAACGTTTTTGTTTTTCTTTTTTAAAGATTTATTTATTTATATGAGTACACTGAAACTGTTTTCAGACACACCAGAAGGGGACATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGCCCTCTGGAGGAGCAGTCAGTGCTCTTAACCGCTGAGCCATGTCTCCAGCCCCTAAAATAAGTTTTTATTGAGTTTGTTGTTTTTTGTTTTTTTTTTAATCCGAGTTATGTATTTGTGTGCTGTATATACAGACCTGCGCCACACTGCACCACGGTTCATATGTAGAGGTCAGAGGGAGTTGCTTCTCTCTTTCCATCACGTGGATTTGGGGTTGGTCATCAGGTTTGGTGGCCTCATGCACCTTTATTCACTGACTCATCTGACCTGCTCTGAACTCTCCTTTTGAAATGTTTTATATTATCACATAGTAAATATAAATAATAGTGTGTTTTATTACATTTTCATACTTTTTTTTAAACATTAAAGCATTGTGGGGTTGGAGAGATGGCTCACTGGGTAAAAGCTCTTGCCACAGAGGCTTGAGGACATGAGCTCGAATCCCCAGAACCTACATTAGAGTCAGACATGTGGTAAGAATGCAGTCCCAGCACTCCTATCGGGAGATGGGAGCTACCGGTAGGAAGATTCTCACAAGTTCATAGGCCAGCCAGCATGACACACATAGCAGAAAACAACAACGATACCCTGCCTCAAACATGGCAAAAGGCAGGGACTGATACCCAAGGTTGTCCTCTGACCTCCACAGGGCATGCATGCATCCACTACTCACACAGACAGTGCTACCTACACCCACACAGAAGAAAAAGTCCCCCAAACATTAGAGAGTTTTGTGGGAGATGACTTACTATGTATAGAGCCCAGGGCCACACATATACTAGGTAAGCACTGAGCACTGAGCCTCAGCCTCAGGTTTCAACTGCAATGCCTGTTGTTCCCATGCCTCCTAGGAAAAAGCTCCTAGGTCCTTGTCTTAGTCAGGGTTCCTGTTCCTGCACAAATATCATGACCAAGAAGCAAGTTGGGAGGAAAGGGTTTATTCAGCTTACCACTTCCACATTGCTGTTCATCACCTAAGGAGGTCCAGGAACTCACGCAGGGCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGAATGTTACTTACTGGCTTGCTTCCCCTGGTTTGCTCAGGTTGCTCTCTTATAGAACCCAGGACCAGCCCAGGGATGGCGCCACCCACAATGGGCCATCCCATCCTTGATCACTAAGTGAGAAAATGCCTTACAGCTCCAGCTTGTGTCAAGTTGATACACAGAACCAGCCAGTACAGCCCTTTTTGTCAGATCTGGTTATATGTAGTGGGTTAAGCCCTAAGACACAAACACCACACTTAGGGCTGATGAGAAGTATGTGGTAAAGTTCAGAGTGAGGACACGTTTCTATTGTATAATAATGACTTAAATGATCTGCAGATGGAAAAAAGAAGCGTGGGTATTGTGTTTTCTGTCAAGGCTTGAGGGAAGCTGCTCATGTTTCTCTGCTTAAGAATCTCTTCAAAGACTTGGCAGTAGTGGAAGGGAAATGAGGACATAACAGGTTCCTGACCCAGCTTGAAGAAAGGGCATGAAGTCAGAGGGGCTATTAATGGAGTTTAGCTGTGGAACACTTGCTTAGCATGCACAAAGCTTTGATCTCTGAACCCACCAAGAATAAGAAAAAAAGAATCTGCTGTTCATGAAAGGAGAGACTGGGCGGTTTTGAGACGTGACCATGGGTTGTAAAGCAGGTAGATTGACTCCTGGCCCTGGTATTGTCCTTCAG
Seq C2 exon
CTCTTTCTTCTTCAAAAGTCCCTTCCTTTCCTGACAAGGACAGTCTCGGGGACAAGATGTTGGCTGCTGCACTTCTAAAGGCCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001341:ENSRNOT00000001815:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]