HsaINT0186799 @ hg38
Intron Retention
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:HGNC:13089]
Coordinates
chr7:100075542-100077433:-
Coord C1 exon
chr7:100077303-100077433
Coord A exon
chr7:100075631-100077302
Coord C2 exon
chr7:100075542-100075630
Length
1672 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GCCCTTTTATTGCCCTTCAGCTC
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
Seq A exon
GTGAGGAATAAGGACTCATTCATTCTTTTACTCAGTCATTCTGCAATCATCCATTGAAATCGCTCACTTACCAGGTACTAGGCTAACTACTAGAATCCAGATGTGAATAAGACACACTCTTCGCCATTCAGTAACTCACAGCCTAGTGGGGAAGCTGACCGAACAGTAATCAATGACAGCTTGATAGGTTTGATAATTGAGGCAGATTGTTTTGTTTTGTTTTGTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCTCAGGCTAGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCATGTAGCTGGGACTGCAGGCGCCCGTCACCATGCCCGGCTAATTTTTGTAGAGACGGGGTTTTGCCATGTTGGTCAGGCTGGTCTTAAACTCCTGACCTCAGTGCCCACCTTGGCCTCCCAAAGTGTTGAAATTACAGGCATGACCCACCGCGCCTGGCCACTGAGGCAGTTTTGAGGGGTTGTGAGTACCTCACGCGAGATTAATGAAACCGTGTCAATCATTCCATTTCTCGGGCATTCTATGCAGCCGACTTCATAGGCATAGTTTGTGCTTTTTAGGAGCATGCTTTTAGAGGAGGCGCTTCGGAATCATTTTATGGGTCATAGACAAAAAGACAGAGTGAATAGGAAGCCACTAAAGTATACTTTGCGGCCGAGCGCGGTGGCTCACTTCTGTAATCCCAGCACTTAGGGAGGCTGAGGCGGGCAGATCACAAGGTCAGGAAATTGAGACCATCTTGGCCAACACAGTGAAACCGCATCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCACGCACCTGTAGTCCCAGCTCCTCCAGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACGCCACCTCAAAAAGAAAAAAAAAAAAGAATTGCAGAAAAAGGTAAGAGATTCAACACAGAAACAGGGAACATTTTTAGTGTACAGATTTGATCTGGGGTGGAGAGAAAGGAGCTGTGGGCATTGTGTTTCCAGTCAGGGCTGGGGTGAAGCTGCTGGTTTTTCTCTGGTCTAAGAACTTCATGCTGGGTGCAGTGGCACACGACTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAAACCCACCTCAAAAAAAAAAAAAATAGAACTTCATGCAAGAGCGGGATCATATGTTTCTGGCCAAGCTTGGGTGAATGGACAAGAATGCAGTAATCACTAAGATAGGACTGGGCGGTTTCATTGAGAGAAGAGTGACTGGAGAGAAGAGGGGACCTGGGACAGACTGGAGACTAAGAATGACCAGGCCTGTGGCCATCTGCTCAGGCAGGATGGACTCGCTCTGAGTTTGCCTTTGTTGGACACACTGTAGCTAGCTGCAGAGGAAGCAAACTTAGAAATGTGAGAGAGAGGGTCCTGTGTTGTCCCAGGACCCCGGGAGCTTTCTGTGGGTTGGGAAGTCAGCAGGTTGGGAGGTCACAGAGCAGATGGACTCATTCCTGGGCCCTTTTATTGCCCTTCAG
Seq C2 exon
CTCTTCCTTCAAAAGTTCCTGCCTTTTCCGACAAGGACAGCCTGGGGGATGAGATGTTGGCGGCTGCGCTCCTAAAGGCCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526:ENST00000299667:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATTCTCTTTTAAAACCCGCT
R:
CTGGGACTTGGCCTTTAGGAG
Band lengths:
216-1888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains