BtaINT0165234 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007012 | ZNF3
Description
Bos taurus zinc finger protein 3 (ZNF3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046614]
Coordinates
chr25:36910313-36914354:+
Coord C1 exon
chr25:36910313-36910439
Coord A exon
chr25:36910440-36912126
Coord C2 exon
chr25:36912127-36914354
Length
1687 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
3' ss Seq
TGTGTTCTATATTGTGCCAGATG
3' ss Score
8.41
Exon sequences
Seq C1 exon
GAACTGGTGACCTTTGAGGATGTGGCTGTGTACTTCATCCGGAAGGAGTGGAAGCGTTTGGAGCCTGCCCAGAGGGACCTCTACAGGGACGTGATGCTGGAGAATTACGGCAACGTGTTCTCCCTGG
Seq A exon
GTAGGAACAATGCTTCCTCAGTGAAACTCCCTTTTGGCCTTCCTTTGCCTCCTCCTTTGCTAGTAACAGTTGAGTCACTGAAAATCATTATCTAAGGACTGACTTCGTCTCAGAAAGTTCTGACAACAATAATAGTGACTCCCATTTGCAGTTTGTAGTTCCTTAAGAGTGTTTACAGATAGTCTCTCCTTCAGTCCTCACAATGTTGCAGCTGTTGAGGCAGCCAGAATTATCCTCATTTTATAGGTGAGGAAAGAGAGCTCAGAGGTCTTAAATGCTTTGCATACAGTCATATTGCTAGTGACTGGGAAGACCCGAGCCCTGGCCTTTAAACTCTCAATCTGTTACTTTTTCTCATGTTATTCTCAGGACTTAACATTAACATATAACCTAGAGATTTTCTCAAAAGATTCACACATTGGGATCCCTGAACATGTGAGGCACTGCTCTGTGTCCAAGTGAAGATTCTGGAACTCTGTCAGGCTCCTCCCCTTCTCTGTTGGACTTCCTCTAGGGACCTGTTGCTTTGTGGATGGACCTCGGGTAACTGCTGCCCTTGTAGAAATTTCACCTTGTGTCAGGGAGCAGTTGGCTTCTTAACCTTTAAGCCTGTGGACTGTTCCTTCCTTCCCCCTCACCCACTGTCAGGACGTTTTCCTGGGCAAGGCCAGGGTCTTCCCCGCTCCCATGGGAGGCCTCCCTCTCTGTGTCTTCTCTGTCCCCTGCAGGTCCTGGGTCTGGGATTGAGCTCTGGGCCATTTGGTATGAACAGGATAAACCTTGTCCTGTCTTTCCCCATGAGCAGGATTCCCTTTTCTGAATTTTGACGTGATCTCTGGGCTGGATTGAGAGGAATTGCCGAGGGGCCTGGATTGGAAGGGAACTGAGAGCAGAGAGGTCCTGAGAGGCACCTGTTCGGGTGAGGGAGGAACAGCTCTTTCTGTCCCTAACGCTCACTGCCCTGCCTTGACTCCTTCAGTTACTGACAGACTAAACATGCTAACCATCTGGACCCCTTCCACTTGTCCTCTATGCCTGAAGTTCCCTTAGAAACCCCAGAGTGCTGAGAGTGGCAAAGTCAAACACAGAAACTGTTTACAAATCCGCTCAGTTAGCACAGTGTTCTAGGCCCAGGGCTGGAGGTGGGCTGACCTTTGTCTCTTGCCTGTTCCCATGGACTTGGTGAAGGTGACGTGACTGCAAACCAGAGTGTCCTGTTCCCCTGGGGCTGCAGGGCTGCACCCTTGTTGTGGCTTCCTGATCTGCTGCTGCTTCTCCACACCCGGCTGTGTCTTCCTGTGGGAGACAGACTGGTCCGTGTTGCGTTTCTTGTACCTACTCCCTTTCATCCTCTCACTGGCCCGGCTGTCACCATCTCCCAGTTTATCTTGAGCCTCTGACCTCTAGGACTTTGTCACTTCATTAAACAGTTTGTCCTGCCTCTGCCTGATCCAGTTTTCTCTTCACTTCCAGCTTATTTCTCGATTTTCCTTCTTTTCTCCTTCCCTGTTTCTTTGGCCCAGTTCTCTTATTCTGCATCAGCTGCATACAGCCTGGGCAGGCCTTTTTGCACATTGATAAGTGGCATGTGCTTTTAGCCTGTGAATATGATGTGATTAGCCTGTCTCTGGTTTTGAGCCTTTTTTCCATAAGGAATAAGTGATATTTGTGTTCTATATTGTGCCAG
Seq C2 exon
ATGGTGAGACCAGAACTGAGCCTGATTCTGAAATTTCTGAAGATAGAGGATCACATGGGGTGCTGTTGGGAAGATTCCAGAAGGATATTTCTCAGGGTCTTAAGTTTGAAGAAGCCTATGAACAAGAAGTCAGTCTGAAGAGGCAGCTGGGGAGCTCCTCTGGAGAGAGACTGAATAGGAAGATGCAGGAGTTTGGTCAAGTAGCAGCTGAGGAGCAGCGAGCCCCCACAGGAGGTAGAAGTGAGAAGTGCAGCGATCTGAGGGACAGCTTCACGGTGAGCGCCAACCTCATTTCCCATCAGAGACTCCCTGTGGGGGACAGGCCCCATAAGTGTGATGAATGTAGCAAGAGCTTTAATCGAACTTCAGACCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAACCCTATGAATGTAGCGAGTGTGGGAAGGCCTTCAGCCAGAGCTCACACCTTATTCAGCATCAGAGGATCCACACTGGGGAGAAACCTTACGAGTGCAACGACTGCGGGAAGACCTTCAGCTGCAGCTCAGCTCTCATTCTCCACCGGAGGATCCACACGGGAGAGAAGCCCTATGAATGTAACGAGTGCGGGAAAACCTTCAGCTGGAGCTCCACCCTCACTCACCACCAGAGGATCCACACTGGAGAGAAACCATACGCTTGTAACGAATGTGGGAAAGCCTTCAGCAGGAGCTCCACCCTCATTCACCACCAGAGGATCCACACTGGAGAGAAGCCCTATGAATGTAACGAGTGTGGGAAGGCCTTCAGCCAGAGCTCACACCTCTATCAGCACCAGAGGATCCACACTGGAGAGAAGCCCTATGAATGTATGGAATGTGGAGGGAAGTTTACCTATAGCTCAGGCCTTATTCAGCATCAAAGAATCCACACTGGGGAGAATCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTTAGGTACAGCTCTGCTCTGGTTCGCCACCAGAGAATTCACACTGGAGAGAAGCCTTTGAATGTAATGGGAGTGAGCAAAAGTTCCCTCCAAGTCACTGCTGAAGTAAATATCAGAGAGTCTACGTGAAAGAGAGGCACACGCCGGTTTTCCTCACTTCCTGAGTCTCCAGAGCTCCTGCCTTACTACCTGAGTATGAACTTAGGACGTGTCCCTTCCGACTCCAACCTTTCACCTTAGAGAACGGGGCCTGTTGGGCAAATCATCCTGGCCCCGTGATTATTAACCTAGTCATTTTTCCCAGGAATGATTCCAGCCTTGAAGAATCAGGCTGCCAGCAACAGATGGAGCGCTGGGAGCAGAGGAAACTCTGGGATCGGTCTCCTTCCATTTGGGAGGGGAGTTTGCACTAGACCATTTTTCTCACACCAGAAGAGCCTTTCCACAGTGGGGATGGAAGCACAGTAGGAATAAAATTCCAGGGGTTCCTCTAGTTGGAGTTGGCACAGTCAGCACAGAAGAAAATGGAAAGAATGTTCTGGGTTGTGTTTCGTGCTAGAAAGGGGAAATGGAGGCTGCATTTCAAAGTCACTGCTTCTAATCCAGCTTTAAATTTTGATGATTTCTTCTTTTGATAAGGAATGTGCTATTTTGTTTCCTGACTTCATTAATCATGGAAATCTGGTGCTGAGGGACTTGTTATTTCATTGGGCAGGTGTAGGGGAACACTGAGAGAGGTTTTCTGTAGTGACCATGTATCCTCCCGGGCTCTTGGAGCAGCAAGACCAAACCTCCACGCATTTGGTGGAGAACTCGCTCATCCCTTTTATGACAGGACTAATGGCAAAGCCCAGGTCCTCCGTGAGCATAACCTGAGGGGAAGGATCCAAAGCCTTTAGTGCTGGCCTCAGTTTTCCTTCTCTTCTCTTCCTCCAGCCACTCCTGTGATGGAAAGTGATTTAAGCTAAACCCCTAGCTACCAAGGATGCTTTTAAGGAGCTCGCTCAGCCAGCTTGCCCTGCCCTCTGAGACCTATGACCTATGACCTCTGGCCCCAGCCACTAGACCTCTCCCGACCCCACCTCTGACTTCAGCAGCCAAGTGTGAATGCAGAGAGCAAAGCCCTGAGGAGGAAGCTTGGGCCTGAGCCTAGCGGAGGGCTCCTTGCTGGGTTAGGATGGAGCTCCCCAAGTTTTCCCAGCAGAAGGGATGACCTTTCATTCTGTTTTCCCAATCCTGCTCATCTGTAGCATAAATGAAATGCACTATTAAACAGAATAGTTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007012:ENSBTAT00000037194:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.0),PF097235=Zn-ribbon_8=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACGTGATGCTGGAGAAT
R:
TGATGGGAAATGAGGTTGGCG
Band lengths:
344-2031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]