HsaINT0186801 @ hg19
Intron Retention
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]
Coordinates
chr7:99667594-99672884:-
Coord C1 exon
chr7:99672758-99672884
Coord A exon
chr7:99669836-99672757
Coord C2 exon
chr7:99667594-99669835
Length
2922 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGCATTTTTTATTGTGTCAGATC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GAGCTGGTAACCTTTGAGGATGTAGCTGTGTACTTCATCCGGAAGGAGTGGAAGCGTTTGGAACCTGCTCAGAGGGACCTCTATAGAGATGTGATGCTGGAGAATTACGGGAATGTGTTCTCACTGG
Seq A exon
GTAAGGAGTTATGCCTTGTCAACAAAACTCGCTGGTGTTTCTTTGCTTCTTCGTTTGCTAGTAACAATCTAGTCACTGAAAAGAGCTGTTTCAGCAGATTTTTTTTTTGAGGTGCAATGGCACAATCTTTGCTCAGTGCAACATCCATCTCCCAGATTCAAGTGTTCCCAGGTTCTCACCTCTGCCTCCCAAGTAGCTGGGACTACAGGCACGCACCACCACACCAGGCTAATTTTTGTATTTGTTTTGTTTTTTTTTGTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCGTCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCACCTGGCCTAGGTAAGGATTGACTTAGTCTTAGGAAACTGTAAGAACAATAATCTTAACTCATTTATACAGCAGTCTGCAACTTATAAAGAGTTCTCATATATATTCTTTCATTTAATCTTCACAGTAACACATTAATTGAGGCAGCTAGTATTATTCCTCATTTTACAGGTAAGGAAAGTGAAAGTAGTCCAGGCGAGGTGGCTCACACCTGTAATCCCAACACTCTGAGAAGCTGAGGCAGGAGGATCACTTGAGGTCAAGAGTTCAAGACCAGCTTGGGCAACATGGCGAGACCCTGTCTCTACCAAATATCCAAAAAATTAGCCAGGCATGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTTGGAGGATCACTTGAGCCTGGGAAGCCGAGGTTGCAGTGAGCCGAGATGGCATTACTGCAGTCCAGCCTGGGTGACACAGACCCTGTCTCAAAAAATAAATAAGTAAATAAAGTGGAGGTGAGAGTAGCGGTCTCAATGTCTTGTGCATGCATGGTCATCAGTTGGGCTGATGAGTGGCAAAACTTGGGGCCCAGTCTTTAACTCCAAATCTGGTACCTTTTTTTTTTGAGATGGAGTTTCACTCTTGTTGCCAGGCTGGAGTGCAATAGCGTGGTCTCGGCTCACCGCAACCTCTGCGTCCTGCGTTCAAGCAATTCTCCTGCCACAGCCTCCTGAGTAGCTGTGATGATAGGCATGCGTCACCACACCCAGCTAATTTTGTATTTTTAGTAGAGACGGAGTTTTTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCGCGCCTGGCCAAATCTGATACTTTTTCCGTGTTATTCTCAGGACTTAATATATAATCCAGAGACTTTTCCGAAGGATTATCCCTGAACACATGAGGTGCTGCTCTTTGCCCACGTCTCTGTCCTCTCCTTCTCTGCTTCTCTGCTCCCCTTCTCTAACTTCTAGGGACCTGTTGCTTTGTTCAGGACCTAGTGCCCCTGCTGCTCTGTAGAAACTTAGAAAGGTTAAGAAATTAGGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGCAGATACTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGTTGAAACGCCATCTCTACTAAAAATACAAAAAAAATTAGCTGGGGGTGGTGGCATGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTTAGCCAAGAACACGCCACTGCACTCCATCCTGGGCGATAGAGTGAGACCTTGTCTCAAAAACAAAAACAAAAAAAGAAAGATTAATAAATTAGTTTCTCAACTTTTAGGATGTAGAATTCCTTGTCTCTCACCCCACTCTTAGTGGGCATTTTCCTGAGCAGAGCCAGGACGTCTTCCTAACTCTCATTTGAGACCTTCCTGTACATTTCCCTTCTGTCCCCGGCAGATCTGGGGTCTGGAATTGAGCTCTGGGACTCTCAGGGTGAGCAGATAAACCTCCTTGTCCCATGTCTCTCCCCATGAGCAGAATTCCCATTTCTGAATCCTGCCACCATCTCTCTGCTAGAATGAGAGGAAGAGCCAAGGGGCCTGGGTTTCAAAGGAACTGAGAGCAGAGAGGTCCTAAGAGGTACCTCTTCAGGTGAAGGAGAAACAGCCGTTCCCGTCCCTAACACACATTACCCTGTCTTTACTTTTTAAAATATCAATTAAGCTAAAAACGCAAACTCTCTGGACCCTTTACATTTATCCTCTGTGCCCAGAGTTGGCTTTAGAAACTCAAAAGGAGTGAAAACAGAGACGTCAGACACTGAGATTCTTTGCATAGCCTTACGTGCGAGCATAGCCTTTTATGCATAGGGCCCAGAGGCGGACTCAGTTGTCTTGCCGTTTCCATGGGCTTGGCATTTGTGGCGTGACGACAGCCATGATTGCTCTTCTTATGGGGCCATGGCAGCCACTAGCATCCTCCCCCTTGCTTGTTCCCGCGCTGCTGCTGTCTCTCCTCACCCTTCCCCCCTTTTCTCACCAACTGTCCTGTACTTGCTCTCCCTTCTTGCAGTCACTGTGTCCCCAGTTATATCCACTGCCCTGACCTCTCTAAAGGCTTTGTCACTTCATTAAGCAATATGACCTTCCTCTTCTAAAGTTGGTTCCCTGCCTCTCTGCCTGATCCGTCCTCCCCTCCACACACACTCAGCTTTCTTTCCACTTCCAGCTCTGTTCTCCTTGGTTTTGCTCTGCCCTGCCCCTTCCCTGTCTCCTTAGCCCGGCTGTCTCATTTTGCCTTAGCCGCACACATGTGGGGCAGGCCTCTTTGTAGGCATGTGCTTTTGGCACTGTAAGTATTCGTTACAATGATCCTGTCCTGTGATTTTCACTCTTTCTTCCCTAAGGAACAAGTGACATTTGCATTTTTTATTGTGTCAG
Seq C2 exon
ATCGTGAGACCAGGACTGAAAATGATCAAGAAATTTCTGAAGACACAAGATCACATGGGGTCCTACTGGGAAGATTTCAAAAGGATATTTCTCAGGGTCTCAAGTTTAAAGAAGCCTATGAACGAGAAGTCAGTCTGAAAAGGCCGCTGGGGAACTCCCCTGGAGAAAGACTGAACAGGAAAATGCCAGATTTTGGTCAAGTGACAGTTGAGGAGAAGCTAACCCCCAGGGGAGAGAGAAGCGAGAAATATAATGATTTTGGGAACAGCTTCACTGTGAATTCCAACCTTATCTCACATCAGAGACTCCCCGTGGGAGACAGACCCCATAAGTGTGATGAATGTAGCAAGAGCTTTAATCGAACTTCAGACCTTATTCAACATCAGAGAATCCACACTGGGGAAAAGCCCTATGAATGTAATGAGTGTGGGAAGGCCTTCAGCCAGAGCTCACACCTTATTCAGCATCAGAGAATCCACACTGGGGAAAAACCTTATGAATGTAGTGATTGTGGGAAAACCTTCAGCTGTAGCTCTGCCCTCATTCTGCATCGGAGGATCCACACGGGGGAGAAACCCTATGAATGTAATGAGTGTGGGAAGACCTTCAGCTGGAGCTCCACCCTCACCCACCATCAGAGAATCCACACTGGTGAGAAACCCTACGCCTGCAATGAATGTGGGAAGGCCTTCAGCAGGAGCTCAACCCTTATTCACCATCAGAGAATCCACACTGGAGAAAAACCCTATGAATGTAATGAATGTGGGAAAGCCTTCAGCCAGAGCTCACACCTCTATCAGCACCAGAGAATCCACACTGGAGAGAAGCCCTACGAATGTATGGAATGTGGAGGAAAGTTTACCTACAGTTCAGGCCTTATTCAGCATCAAAGAATCCACACCGGGGAGAACCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGGTACAGCTCGGCTCTTGTTCGCCATCAGAGAATTCACACTGGAGAGAAGCCTTTGAATGGGATCGGCATGAGCAAAAGCTCCCTCAGAGTTACGACCGAGTTAAATATCAGAGAGTCCACGTGAAAGAGCCACACACCCATTTTCCTCACTTTCCCTGAGTCTCAAGAGCTCTTGCCTTACCCTATAAATCTCAACAGCTTAGGATGTGTCCCTTTCAACTCAGACTTTTCATTTTAGAGAATGGGGCAGATGGGGCAAATCGTTGAATTTTCCCAGAAATCACACCAGCCTTAGAAAGCGTCAAGGCAAGTGGATGGCGTGCTGGGAATAGAAAGCAGCTCTGGGACCAGTTACCCCATTTAGGAAAGGAGTTTGCACTAAACTGTTTTTCTCACAGCAGAGGAACCTTTCCAAGGTGGGGATGGAAGCACAGTCGGGACAGAATTCGATGGATTCCTTTAGTTGGAGTCCGCGTAGTCAGCACAGACAGCAGTGGAAAGGACGCTCTGGGTCCTGTTATTTGCTAGGGAGGGTAAAGGGAGACTATTTCAAAGCTACTGTTCCTAGTCCAGCTTTAAGTTTCGGTAAGAAACATGCTGTTTTGTTTCATGATTTCGTTAATTATGGAAATTTGGCATTGAGGGATTATTTTATTGAGGGTAGAAGAGATTCCAGAATCATCATCTGTGATGATGGTGTCCTTTAGGGCTCTTGGAGCAGCCAGACCATGTTTCCAAGAGAAACCTGGTGATATTGCCAGCAGACCCCCTGCCATCCCCCCCAGTTGTCCTGGGGCTGAATGGGCAAATCTGTCCAAACAGCTAGTAACCGGCTGTGAGGGAGAGGGTCAGAAGCACTTAGCGTTGGCCTCTGATTGCTGTCCTCTCTTGTCCTCTTCCCACTCCAATGATGAAAATGATTTTCTCTAAATGCCTGGGTAAGGATGCTTTCAAGGAGCTCACTTGGCCTGCTTGCCCTGCCCTCTCACCTCTGACACCCAGCCCCAGGAGCCAGACCACTCCTGCCTCCACCTCTGACTCTTCAGCAGCTGAAGATTAATGCAGAGAAAGAGCAAAGCCCAAAAGGGAGAAAAAAAAAACAAAAAAACAAAAAAACGAAGCCCAGAGAAGGCAGGCTGTGCCTGAGCCTGGTAGCAGAGCTCGTTGCTGGGTGAGGATGGCACTCCCCGAGTTTTCCCAACCGACGGGATGACCTTCCATTGTGTTTTCCCAACCCTGCTCATCCTGTAGCATAAATGAAGTGCACTATTAAACAGAATAGTTTTTCAGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-ZNF3:NM_032924:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.335
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3),PF074636=NUMOD4=PU(48.2=62.8)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.0),PF097235=Zn-ribbon_8=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)