BtaINT0165391 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038869 | ZNF383
Description
Bos taurus zinc finger protein 383 (ZNF383), mRNA. [Source:RefSeq mRNA;Acc:NM_001102232]
Coordinates
chr18:47513679-47514208:+
Coord C1 exon
chr18:47513679-47513805
Coord A exon
chr18:47513806-47514112
Coord C2 exon
chr18:47514113-47514208
Length
307 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATATCTTTTCTTGTGAGCAGGAC
3' ss Score
6.82
Exon sequences
Seq C1 exon
GGATCAGTGGTGTTCAGTGATGTGTCTATAGACTTCTCTCAAGAGGAGTGGGAATTCCTGAACCCTGCTCAGAGGGACTTGTACAGAGATGTGATGTTGGAAAACTATAGCAATCTGGTGTCAATGG
Seq A exon
GTAAGGACATCTATACTGGTATTTTGAGTTCTCCCCTGGAATGTCTCTTTCTTCTGCAGTGACTTTCTCAGCTACTTTTCAAGTTACCAGCTGAATTTCTGCTCCCTGTTCTCAAATAAATGGTTTGAACTGAAATGGAAAGGAAGAGTGGGAAATGAGCAGCTCCTAGTTGGCTATGGCTGAGCCTCTTCTTTGTTTGACTGTTCCCACAGTAGCATCTCTTCCTTGATCATCAAGGGACTGGTATTACATTCGGGTCTGATTTACCCACAGCCTAACCATGTTCCATATCTTTTCTTGTGAGCAG
Seq C2 exon
GACTTTACATTCCCAAGCCTCAAGTTATTTCCTTATTGGAACAAGGGAAAGAGCCATGGATGATTGGCAGAGAGCTGACAAGAGGCCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038869:ENSBTAT00000024544:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGTGTTCAGTGATGTGTCT
R:
CACAGGCCTCTTGTCAGCTCT
Band lengths:
214-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development