HsaINT0187060 @ hg19
Intron Retention
Gene
ENSG00000188283 | ZNF383
Description
zinc finger protein 383 [Source:HGNC Symbol;Acc:18609]
Coordinates
chr19:37726451-37726976:+
Coord C1 exon
chr19:37726451-37726577
Coord A exon
chr19:37726578-37726880
Coord C2 exon
chr19:37726881-37726976
Length
303 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATATCTTTTCTCGTGAGCAGGAC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GGATCAGTGATGTTCAGTGATGTGTCCATAGACTTCTCTCAGGAGGAGTGGGACTGCCTGGACCCTGTTCAGAGGGACTTATACAGAGATGTGATGTTGGAGAACTACGGCAATCTGGTTTCAATGG
Seq A exon
GTAAGGGCATCTGTACCAGTGATTCCCAGTTCTCCTCTGGAATGTCTCCTTCTTCCACAGTGAATTTCTCAGCTGCTTTTCAGGTTACTAGCTGAATTTCTATTCTTTATTACCAAACAAATGGTTTGAGCTGAAATGAAAAGGAAGAGTGGGAAATTGGCAACTCCAGTGGGCTGTGGTTGAAGCTTCATCTTCATCTTTCTTTGGCTGTTCCTGTAGTGGCATCTCTTCCTGTGATCATCAAGGGACTGGATCTCCTTTACCCCCAGCATAACCATGTTCCATATCTTTTCTCGTGAGCAG
Seq C2 exon
GACTTTACACTCCTAAGCCTCAAGTGATCTCCTTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGGCAGAGAGCTTACAAGAGGCCTGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188283-ZNF383:NM_152604:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGTTCAGTGATGTGTCCA
R:
ACACAGGCCTCTTGTAAGCTC
Band lengths:
214-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)