GgaINT0002561 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:41700699-41701544:+
Coord C1 exon
chrUn_random:41700699-41700822
Coord A exon
chrUn_random:41700823-41701433
Coord C2 exon
chrUn_random:41701434-41701544
Length
611 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCCTGTTTCTGTCATTGAAGCTC
3' ss Score
6.09
Exon sequences
Seq C1 exon
CCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGACGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
Seq A exon
GTGAGGGCTTTGCTGCCTTTCCTCCTCATTAGGGCTCCATGGGCTGTGCTGAATGAGCCTCTGCATGCCGGGCCTTGAATAACTGCCATGCAGTTACATATTGACTAACACCACAGTGACAGCAACAACGGAAACACAGAGTAGCATGAGTTTCAGGAGGCCTTCTTGTGCTCAGCACTGTGATAAAAGCCTCAGAGTCAGTGCTGGCTAGTAAGCAGCAGCAGGAAGGGGGATGATCAGTTTCCTGCAAACAGCCCTTGTGTTGTTGCATTGCATGGTGCCACCAGCTCCAACTAAGAGATGACTCGCTGGTTACTCCTTTAGAATTTAGGATTTTCCATTCAATTGCCATAAATATTTTGATGCCATGCTCACTGATATATTGTAAGCAAGTAAGCATGCTGTTGTAATGTTAATTTTAAAGCAAATATCCCTTCATAATGTCCAGAGATGTAAAAGCTTTCTTTGCTCCAAAGGAAGCTGTGGCTCCAATGTCATTCAGGCCCAAATGGTGCTTTCTCCATGTGGAGGGACACACAGTGGAGATGTTGAACAGTCACTGTGCCGCAATGATGGAAATGCTCTCATCTCCCCTGTTTCTGTCATTGAAG
Seq C2 exon
CTCCTCTTCCAGCCCCCAAACCCGGGCTGATCTCCCTGCTTGAAGGAGGAGAAGACCCCTGGATCCCAGATGTGCGTAGCCCTGAGGCCGTGCCAGGAGACCTGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022172:ENSGALT00000035722:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.447
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCTTTGCGGAGGTGG
R:
CTCAGGGCTACGCACATCTG
Band lengths:
207-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]