HsaINT0187060 @ hg38
Intron Retention
Gene
ENSG00000188283 | ZNF383
Description
zinc finger protein 383 [Source:HGNC Symbol;Acc:HGNC:18609]
Coordinates
chr19:37235549-37236074:+
Coord C1 exon
chr19:37235549-37235675
Coord A exon
chr19:37235676-37235978
Coord C2 exon
chr19:37235979-37236074
Length
303 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATATCTTTTCTCGTGAGCAGGAC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GGATCAGTGATGTTCAGTGATGTGTCCATAGACTTCTCTCAGGAGGAGTGGGACTGCCTGGACCCTGTTCAGAGGGACTTATACAGAGATGTGATGTTGGAGAACTACGGCAATCTGGTTTCAATGG
Seq A exon
GTAAGGGCATCTGTACCAGTGATTCCCAGTTCTCCTCTGGAATGTCTCCTTCTTCCACAGTGAATTTCTCAGCTGCTTTTCAGGTTACTAGCTGAATTTCTATTCTTTATTACCAAACAAATGGTTTGAGCTGAAATGAAAAGGAAGAGTGGGAAATTGGCAACTCCAGTGGGCTGTGGTTGAAGCTTCATCTTCATCTTTCTTTGGCTGTTCCTGTAGTGGCATCTCTTCCTGTGATCATCAAGGGACTGGATCTCCTTTACCCCCAGCATAACCATGTTCCATATCTTTTCTCGTGAGCAG
Seq C2 exon
GACTTTACACTCCTAAGCCTCAAGTGATCTCCTTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGGCAGAGAGCTTACAAGAGGCCTGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188283:ENST00000352998:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGTTCAGTGATGTGTCCA
R:
ACACAGGCCTCTTGTAAGCTC
Band lengths:
214-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains