BtaINT0165440 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022887 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr24:3994228-3998376:-
Coord C1 exon
chr24:3998210-3998376
Coord A exon
chr24:3994318-3998209
Coord C2 exon
chr24:3994228-3994317
Length
3892 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CCCTCATCTGTTTATTGTTGCAA
3' ss Score
-0.39
Exon sequences
Seq C1 exon
GAAGTTCACGTGCCACTTGTGCGACAGAAGTTTCACAGAGAAATGGGCCCTCAACAACCACATGAAACTGCACACGGGGGAGAAGCCGTTCAAGTGTACCTGGCCTACCTGCCACTACTCCTTCCTCACGGCGTCCGCCATGAAAGACCACTACAGGACGCACACAG
Seq A exon
GTGTGCCCGTCCACCTGGGCCCAGGGTGCAGGGGGCTTCCGTCCTCTCAGCCAGAGGGCATACAATGGATTTCCTGTTTGAAGGGTTTAAGGTTGTGGTAATTATATGTTAAAAGCTGTGGCATCATTTCTTCATGTTTCCATGATACTTGGGGAATTTTAAAGTGATGTTTTAATATTTGTATGCGCATGCATTCACACAAAGGAAGTTTCATATTTCAAAGCTGATTTATGTTGGGTGTGGGAACATGTATGTGTATGTGTTTAAACACATCTTTTTTGGTGTGATCTTGGTAGAAGATGATTTGGGGAGATTAAGTTTTCATAGAGACCTTGTCTTCTGTTTTGTTACTGGTGTGAACTCAGTGCCATAATATTTTTGAATAGTACTGAGTCTTGATTTTATGTACCACTTAACATTTGAAAAATCAACTTAATACTTCTCCTAAGAGAATGTTACCAGATTCAAGAGCTTTTGAAATAAATTCAGAGACTAATTTGAATTTAGCTAGTATAAATTCTTTAGGTAATTGAAAAAGTACAAGTTCACATACATTTTATCTCAAAACGTCTGATGGACTGTTTGGAATTTAAAGCAGCACAGAGAATACATCTGTGCTGCCCATGGTTCTGAGACCTCTCGGTTTGGACCTTCATGAATATGTCTCCCCTCACCACCCTGTGGTCTGTTCACTGTACACGACATGATTTCATTATCTGAGGACAAGCCCCTCAGCTCCTCACAAGTGTTCAGGCCAGTGCTCGCCTCATCTCACCATGGCGAGGTCACTGAGAGCTGGTTGGTGTTTTGTGGTCTTCTTTCTCTTTACAGCCCTCAAGAAGTGTTTTGTTTTAGGGAAAAAATAAATAAATTTTAATCAGCATTCCCAAATGTTCTTCTGATTGCCAAGAATCCTGTGTTATTGTTAGAAATTATAGGTTCAAAGTTCTTCTGAAGCAGTTTGTGGGACGCCCAGGCCTCCTTAGCTTCCCTGACAAGGGCGTTGACGATTTAAGGTCTCCAGCCTGCCCTGAGAGATCACTTATATCGAACAGCAGATGAAAAGCCAGTGCAGATGTAATTTATCGTCGGCGTTTCCTTCTAAAGAATAATTGTGGAGACTTGGCTGGATCAATAATATGGATTTTTGTTGTTAGGTCTTGTAGTCTGCACCATAATGAGAGATAGGGGACAGTGGCTGTTTTCTAATAGAAAATAAAGGATTGGTTTCCGTGTCTTTCTGCATTTGAATGTGAAATGGCACACTTGAAACTAATTCGAGTTGTTAAGAAAAGTCTCCTATTAAATCTGCTAGCATATAAATATGGCACATTAACTGAATCCCCTTTATATCGAGTATATTATTACATTTAGTTTTCTCTTAAAATTGTTTTATTGAAAAATACCCTATTGCCCCACTATCCAACTCCCCCTTTAAAAAAAAAAATAGGGCAAGTGCAAATTGAATTTAGAATGACAAACAAATCAAACTACCAAAGTAAATATGACATACAATACATTGCAGACTAATACCCTAGATAAAATCCTACACATCAAAAAATCAAGGTCACTAATGTATCTAGAACCAAATTGTGTAGAAAATTGATAATTCTGTCTTTGTGCCTATACATGTCTTAAAATAGGGAAGGAAATACAACATATGCATGCAGCACGGAGAAGGCAATGACACCCTACTCTAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGAAGGCTGCAGTCCATGGGGTCGCTGAGGGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCACTGGAGGAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTCTGGGGTTGCACAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGCAGCATATGTGCAGCACATACAGCTGTAAAAAACATACATTTCATGAGCATTTGTTAGTGTTTGTATCGTATAAGAAAGATGTAGTTTGCAAAGAAGTTCATAAACGAGAGAGAGGAAGCATTGTCTTCTCAAATCAAGAAATAATAAGGGTGCTCTTTCCTCGTTAGGGATTTTCTGGCTGGGTTGTGCAGCACTAGCCTTTTCTCAGCCACACACCACCAGACGTGCTGATCTTGCATGTGCGTGTGTGGACCGCAGTGCACACATTTCTGCACGCTCACAAAGGGTTAATGCCCACAAAGCTGTGGTGATGAATACATTGTAGAGAACAATTTTGCCTCAATGAAGAGTAGTATGTTAATATTAACGAGCAAATTATCTTTTGGGATTAAAAAAAAAAGTCTGCTTTCAGTGTTATTTAATTGATAATATAGCTAGTTAGAAAGATTTATATTTCAAATTGATTAAATAATTAATTGAATGATTGTAATTAAACCTTATTCTTCACAGCCCATCTTCTCTATTCTTTTTTTCTATATTGATATCATGATGCCAAGAAATAAACTTAACCTCAAAATAGGGAAGTAAAGATAGGGAAAGGGCTTAAATTCAGCTTTAATGTATAAACGGTAACAATGTGTTTAAACACATCTTTTTTGGTGTGATCTTGGTAGAAGATTGGGAAATAAGATCTTACCATTGGGAAATAAGATTAAACATTATTTGGTTAAAACTCTATTAATACATGTTTATTTAGAGAAGCTAGCATTGCTCTTAGGTAAAGGGAAATCTCTTTTTGATTACGGAAGTTACTCTGCCTTCCTGTATTTACTATTTTTTCTGACCTTCAAAAGGCAATTACCATTTCCAAAACACCTTAGCTAGATTTCTGTTGTGATACACCTAAATGCTTTAGAACAAAGCAGGCTGACATGGGCACAAACCCTGAAAGACTTGTTGCATTAAATATCCGAATGAGTAAAGTAGATGAAATGATTTGTTTTATTTGCAAAATGTATTTTCTAATTTCACTGACCCTCTCTGTCCAAGGTCATCATTTTTCTTCTCCTTTTCTCTTTGTGAGCCTTCTGGGCTGGACTGCCTAGGTGCCAGCACTTATTGCTCGAATATGCTGTAGAAGAGAAAGAGAGAGGTTGCGTTTATAAACTGCAGGGCAGAATGTTAGCTTGTGTAAAATGGTTTATAAATGAGTTTGTATACATTTTTAACTAATTTGAAGTCCACCAAATGTGTCTCTAATTGTTGAATAGTTTTCCAGTCAAGAGTTATCATGATAGGAGTTTTAATACAATTTCTTTAGCAATCCCAGACTTCCTTTTCTTTTTATGCCACGAAACTTCGAGAAACATAATGGCACTGAACTGCCATTGGTATTGAGTAATGCAGATTTTACTGTTCCTTGGGATCTTCAGTATGTTTGGAGAAATCATTTAATTCATATTGTTAAGCAGGAAGTTATTAAAGAAGACTCAGGATCAGGTAAAACCAATTCAATCTCCTTCAGTTGTTAGAAAATTCAATATGTTTTATTTAAGCGGAATCATGTATACTGTATATTAACCATTCCAAGCAATCTTTAGTCAGCCCAGAAAGGCCAGATGTATGGGAATTGTAAAAAATCAGGATATGCATAAAAACTGTTCAAGTGCATAAAGCAGCCCCATCTGGAAGACATCTACCAGAAATGAAGTTGTACAAAACCATTCCATTGATAATAAAGCTAATTTTTATGGGTCTGACAAGTATGTAATTATGTTCAGTGGTGCTTTTCAGATTTTATCACAGTCAATAAACCGCAGTGGTAATTTCATTCCCATTTGACATATTTACATGGAAACATTTGATTGGAGGAATTAGTAACCCTGAAAGCCTTGATAGATATGTTTTAATGATCTGTGACCTCCGCAGTCCCTCATCTGTTTATTGTTG
Seq C2 exon
CAACAGGCGAGAAGTCGTTCCTGTGTGACCTCTGTGGCTTTGCGGGCGGGACCCGGCACGCCCTCACCAAGCATCGCCGGCAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022887:ENSBTAT00000031106:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=49.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]