HsaINT0187133 @ hg19
Intron Retention
Gene
ENSG00000215421 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:19904]
Coordinates
chr18:72589153-72593075:+
Coord C1 exon
chr18:72589153-72589319
Coord A exon
chr18:72589320-72592991
Coord C2 exon
chr18:72592992-72593075
Length
3672 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCTGTTTGTTGTTGCAACAGGCG
3' ss Score
7.54
Exon sequences
Seq C1 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACAGAGAAGTGGGCCCTGAACAACCACATGAAACTCCACACGGGAGAAAAGCCGTTTAAATGTACCTGGCCCACGTGCCATTACTCATTCCTCACAGCCTCCGCAATGAAAGACCACTACAGGACGCACACAG
Seq A exon
GTGTGCCGCGCCGCCTTCCTATCCCAGGAGGCTGGGCAGAGGTAGACTGGGTGGACTGTGGGAACAGAGGCATTAATTATCCCATCTTCATAGTAATCAATGGAAATGATGTCCTGCTTTAAGATTGTGGTAATTATGTATTTATAGGTATGGTATCATTTCATTATTTTTCAGTGAGAAGGCAATTTTAAAGTGACATTTGTGCTTGTGTGTGAATGTGTTTACATAAAATAAGTCTATATTTAGAAGCTCATTTATGGTGTATGTATGTGTATATATATATTTGTATGTGTTTAACATGTCTTTTTAGAAGATCTTTATAGAAGGTCATATGGAGAGATTAAGTTTTCAAAGAGAGCTAGTCTTGTGTTTTGTTACTGATATAAACGAATTTCCATAGTATGTTTGAACATTAATGAATCTTGGTTTTATGTACCGTTTTAAGAAACTGTTACCACATGAATATTTTTCTTCTGAGGAGGATACTGTCAGATCCAAGAGTTTTTGATAATTGATACAAATACTTGGATAATTGATACAAAGACACTAATCCGCATTTAGCTACTATAATTTTTTTGGAAAGTTATTAAAAATGTTCAAATTCACATACATTTCACATCAGAACATGTAACAGAGGGTGTGGAATTTCCGCTAATTGGTATGTGGAGCAACACTGAGCGTACATCTTTGGTAGGGGTGGTGCCAGAACTCTCAGTTGGGCCCTTGTAAATGTAAATCCCAGTAAGACCCTATTGTGATGTTTGTGATTTCTTTTTTATAGTCTAAGTCTAGTGGGCCCAAAACTTCCTTACAAGCTTATATTTGAGTCTCTCCCTAGAGCATTGTGGCCATATTCCTGTGAGCTGTTTGATATTTTTGTGGTCTTCCTTCTCTTTACACCTCTCAGAATGTATTTTGTTTCAGGGAAAAAAAATAATACATTTTAATCAGCATTCCAAAATGTTCTTCTGATTGCCAAGAATTTTATATTATTGTTAGAAATTATAGGTTAAAAGTTCTTCTCAAGCAGTTTGTGGGAAGCCCAGGCCTCCTTAGCTTCCTTGACAAGGGTGTTGACGATTTAAGGTCTCCAGCCTGCCCTGAGAGATCACTTATATCGAACAGCAGATGAAAAGCCAGTGCAGATGTAATTTATCGTCGGCGTTTCCTTCTAAAGAATAATTGTGGAGACTTGGCTGGATCAATAATATAGATTTTTGTTGTTAGGTCTTGTAGTCTGCACCATAATGAGAGATAGGGGACAGTGGCTGTTTTCTAATAGAAAATAAAGGATTAGTTTCCGTGTCTTTCTACATTTGAATGCAAAATGGCACACTTGAAACTAATTCAAGTTGTTACAAAAAGAAGTCTCCCATTATATCTCTGCTATCATATAAATAGGGCATGCTGAATGAACCCCCTCTAAATTCAAGAAATTTTACATTTAGTTTTTTCTTAAAATTTTTTTTCTCAAAAAAAACACTCTGTTTGGCTGCTGATCAAACCTAACACCCCAACCCACTCCAAAAAAAAAAAAAAAAGGCAAGTGAAAATTGAGTTTAGAATGAAAAACAAATCAAGCCACCCAGGTAAATATGATATACAATACATTGGAGACTAACATCCTAAATAAAATCATACACATAAAAAAATCAAAGTCACTAATGTATTGAGAATCAACTCACATAGAAAATTAATAATTTTGTCTTTTTGTATGTATAAATCTTAAAATAGGGAAAGGAATAAAAATATATAAAGCATATATGTAAGTATGCAGCATCTATGCATGTAGAAAATATAAATCTTAAGAGGGATTTTCTATGCTTGTTCATGTTTCTATTTTACAAGATGCAGGCCACAAAGAAGTTCATAAATGACAGAAAGGAAGAATACTTGAATCCAGAAGTCCTAAGATTGCTCTTTCCTCATTAGAAATTTTGCTTATTGAATGATATGGCACAAACACTCCCACTAGCACACACCACCAGATGTGTGTGTGGTGCTGCACACACACTCCTCACACGCACAGCAGGCAGCACCCACGGACCCGCAACGAGGAATTGATTGGAGGGAACGATTTTGCCTCAACATAGAAAACTGTGTTAATATTAACGAGCAAATTGTCTTGTGGGATTAAAAAAAATCTACTCTCAGTGTTATTTAATTGATAATACAGCTAGTTAGAAAGATTTATTTCAAATTGATTAAATAATTAAATGAGTGATTATAATTAAACTTTATTCTTTACAGCCCATCTACTCTATTCTTTCTATATTGAAATAATAATACCAAGGAATAAACTTAGCCCCAAAATAAGAAGTAAAGATAGCAAAAATATTTAAATTCAGCCTTATTTTTAAAATGATAATAATGAACATTTTAACTTACCCTTAGGAAATAAGATTAAGCGTAATTTGGTTAAAACTCTCTTTAAGTATATGTGTTCGTTGAAAGTAGAAAAGCCAGTAATGTTCTTAAAATAAAGGGAAGACTCTTTTGATTACTGAAGTTATTCTCCCTTCCTATATGTACTATTTATTAGAACCTTAAAAAGGCAATTATAATTTCCAAAACACCACAAGTTAAGTTTCTATTATGATAAACCAAAGTGATTTGGGACAACACAGCCTGACTCTGGCCAAACTCTTGAAAGACTTGTTGCATTAAATGTCTAAATGAGTAAAGTAGTTAAAGATAGATACAAATGATTTATTTTATTTCTGGAAAAACATTTTATAATTTCACTGAATCTCTCGAAGGTTAGCATTTTTCTTCTATTTTGCCTTTCTTTGTGAGTCTTATGGGATGATCTGCCTAGCTGGCCAGCACTTACTGCCTGAATATGCTGCAGTGGGAAGATAGATTGCATTTATAAACTTAGGGCACATGTTAGCTTGTGTGAAAATGCTTAAAAAAATGAGCATTTGCACACATTTAACAAATACTAAGTCTGCCAAATCTGTCCCTAAGTGTTGCAAAGGTTTCCAATCCAGAGCTGTCATTAAAGATGAATAGTATGAATTTTTGTACAATTTCTGTAGCAATCCCTAGACTTTCTTTTTTATGCCATGAAAGCGAGAAACATAAACAGCATTGAATTGCTACTGGTACTAATATAGATTTTATTGTTACTTGGGATCTTCAGCATGTTCAAGGAAACCATTTAATTCATATTATTAAGAAGGAAGTGATTAAGGAAGACCCTAATAGAATCAGGTAGAACCAATTCAATATCCTTAAGTTGCTGGAAAATTCAATCTGTTTTCTTTAAGCAGAACCATATATACTGTATATTAACTATTCCAAGCAATCTTTACTCAGCTCAGAAAGGCCAGATGTATGGGAATTGTAAAATATCAGGATATGCATAAAAACTGTTCAAGTGCATAAAGCAGCCCCATCTGGAAGACATCTACCAGAAATGAAGTTGTACAAAACCATTCCATTGATAATAAAGCTAATTTTTATGGGTCTGACAAGTATGTAATTATGTTCAGTGGTGCTTTTCAGATTTTATCACAGTCAATAAACCGCAGTGGTAATTTCATTCCCATTTGACATATTTACATGGAAACATTTGATTGGAGGAATTAGTAACCCTGAAAGCCTTGATAGATATGTTTTAATGATCTGTGACCTCCGCAGTCCCTCATCTGTTTGTTGTTGCAACAG
Seq C2 exon
GCGAGAAGTCGTTTCTGTGTGACCTCTGCGGCTTTGCCGGCGGGACCCGCCACGCCCTCACCAAGCATCGCAGACAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215421-ZNF407:NM_017757:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)