RnoINT0168187 @ rn6
Intron Retention
Gene
ENSRNOG00000043357 | Zfp407
Description
zinc finger protein 407 [Source:RGD Symbol;Acc:1310645]
Coordinates
chr18:81204798-81208554:-
Coord C1 exon
chr18:81208388-81208554
Coord A exon
chr18:81204882-81208387
Coord C2 exon
chr18:81204798-81204881
Length
3506 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCTGTTTATTGTTGCAACAGGCG
3' ss Score
7.05
Exon sequences
Seq C1 exon
GAAATTTACATGCCACTTATGTGATAGAAGTTTCACGGAGAAATGGGCCTTGAACAACCATGTGAAGCTGCACACAGGAGAAAAGCCGTTTAAATGCACATGGCCCACGTGTCACTACTCGTTCCTCACGGCCTCAGCGATGAAAGACCACTACAGGACACACACAG
Seq A exon
GTGTGTCACCCTCCTAAATCAGAGACTGGGCACGGGAGTCCGATGGGCTTCAGGAACGTGTGCGTTGGTTTTCTCGATAGCAGCCGGTATTTAACATGACATTTTTGTAGAGGTTGTACTACTTGTATCTGAAATTAAGGTCATGATAGTTGTATGTGAAAATGGCTTTCCTTCTTTCATTTGCAGCGTTGGCCAACTTAGTATGGGTTATGTACATGCTCCTGTGTTCAAGCAGTCTGGGTTCAAATTTGACAGCTCCTTTCCCTGGTCACATGGGCATATATTAAGTTTTTAAAGAAAACTTGTCTTCTATTTCATTGTAGATGTACTCTAAATCCCTTTACATTTAAACATATTGAATCTTAGTTTTATGTACCATTTTCTAAATATAAGCAATTTTATATCATTTCTCAATAAAAACAATGTCACACCCTAGAGTTCTTGAAATGCAGAGGCTAATTCGAATTGAGGTACCACATCCTTTTCATAAAACTGTTTTTAAAAAGCTTCCATAACGTACAGTTTGCATGAACACATTAACCATGACCATGTGTGATCTAACTTAGCCATCTTGAGAGTCTCTCTGTGCAGCGTGGTTGAAACAACTCAGTTGGGGCCTTTATCTGGGCATAAGCCCTTGAGCCCTGTGGCCATGTCCATTGTGTAGCACATGACCTGCATAGCTTCCATGACCTTCATGGCTGTGGTACAGTGGGTCCAACACCTCACGGTGGCTTGTGTTTGAATACTTGCCTGTGTTCCTGTCTGGGACTCTCAGCCATTTAGTATTTTTGTGGCCTTCTTTTTCTATTCATTGCCCAGAATATATTCCCCATAGGATAAAATAATAAATTTTAATCAGCATTCAGAAATGTTCTTCTGATTGTTGTGAATCCTGTATTATTGTTAGAAATTGTAGGTTGAAAGTTCTCCTGAAGCAGTTTGTGGGAAGCCCAGGCCTCCTTAGCTTTCTTGACAAGGGTGTTGACGATTTAAGGTCTCCAGCCTGCCCTGAGAGATCACTTATATCGAACAGCAGATGAAAAGCCAGTGCAGATGTAATTTATCGTCGGCGTTTCCTTCTAAAGAATAATTGTGGAGACTTGGCCAGATCAATACTATGGATTTTTGTTGTTAGGTCTTGTAGTCTGCACCATAATGAGAGAGGGGACAGTGGCTGTTTTCTAATAGAAAATAAAGGATTGGTTTCCATGTCTTTCTATGTTTGAATGCAAAATGGTACACTTGAAACTAATTCAAGTTGTTATTAAAAGAAGTCTTCCATTTAATCTCTGTTATCATTTAAATATGGTATGCTAAAAGAATACTTTCTTGGTTGAGTGAAATATTGCATTGAGTTTTTTTTTTTTCTTATAATTTTTTTCTCAAAAAAAAATACTCTCGGCTTGTTGTTCAACAGTTACCTCCCCCTCTCAAAAAAAAAAAAAAGTAAAAATTGAATTTGAAAACAAATCAAGCCACCAAGGTAAAGATGACATACAATACATTTGAGACTTACACCCCATATAAAATCCTACACATCAAAAATCAAGGTCACTAATGTATCTACAATTAAATCTCCCAGAAAATGAATAATTTTGCCTTTTCATGTGTATATACCAAAAGTAGAACGTGAATAGGTCTTGAAATGTGTACGCAGCATTGTACACATGTGAGAATGTTAAACTCTGACATTTCCCTATGTTTGTTAACGCTTATTTTGCAAGGAAGAAATAGGTGGCAAAGATTTCATCAATGGGAGGAGGGATGCACTCTTACCTCCATGGTGGGGGCTCTCTCCCTGTTACCCACCGCTGCCCCCTTCACACACGCATGTGCACATGTGAATAGGTGCAGACACATTTCTACCTGGTAGTCCTTATGTCTTTGTGCATGTGTAAGGACATCTGTTCTCTGTCAGCACACATGAAACTCTCTGCAAAACTGCGAGTGAGGAAATCCTAGAGAACAGTTTTGCTTCCTTATTAAAAAATGTGAATATTTATGAACAAATTGGTGTTTTTAGTACGAAAAGTCTACTTCAGTGGTATTTAGTTGATAATACAGTAGTTAAAGGATTTGTATTTTAAATTGATTAAATAATCACACGAGTGGTTATAATTAAACATTAAACTTTATTCTCCACAGCGCATCCGCTCTATTTTCTGTATGGGATAATATCAAGTATTGAACTGTGACCCTGAAGTAGGAAGTAAGGCAGCAAACGCACTGCATGGCAACCTTCTTTGAGTGATAATGGCAGTTTAGCGTTCACTCGGAAATGAGAGTAGCGGCATTTTGGCTCAGGCCTTCTTCATGTTTCTCTTTAAGAACATAGAAATATACTTACTTGAAGGGTGGCTCTTTTGATTGCCACAGTTAGCTTCTATCTTGGTTTTGTTATCATAACCTTGGAAATAGGCATTGTTTGCAAATGCATTGCCAGCTAAATTTATTGTGCAACTTCAAACTTGGGAAAGGCTTGCCCATTATGAGGACTTGTCACTTTAAAGTCTCAGTGACTAAAGAAGTCGATAGAGATGGACACAAATGATGTATTTTATTTCTGGAAAGGTCTAATTATTTCCCCTTAATTTCTCCAAGGTGAGCATTTTAATTCTGTTTTCCCATCATTGTGAGTCTTACAGGATACATTATCCAGCTAGCAAGCACTTGCTGGCTAAATGTTATAGTACAGCTATATATAGTACGTAGAGACTGTAAGTCAGGAAGTTAGCATATGTAAAATGCTATGAAAACATCCACTTGCACACTTAGCAAGCCTGCATCCTTCAAACATGCCTTTGATTCTGAAGATGTTTTTAGTCTTGAGCTATCATTGAAGATGAGGGATATGAATTTTTATAGATGATTCTCAGCAATCCCTGGCTTCTTTCTGCCATAAAACTTGAAAAACACAAACACCATTGCCTTGCTCCTGGTCTTGAGTAATGAGAGTTTCATTCCCTTCAGATCCTCAGTCTGTTCAAAGAAGCCATTTAATTCCTATTATTAAGTGTAAGGTGATTAAAGAAGACCCTGATAGAATCAGGTAAAACCAATTCAATGTTCCTAGGTTGTTAAAATTTCAATATATTTTATTTAAGCAGAATTATATATACTGTATATTAACTATTCCAAGCAATCTTTACTCAGCTCAGAAAGGCCAGATGTATGGGAATTGTAAAAAATCAGGATATGCATAAAGCTGTTCACGTGCATAAAACAGCCCCATCTGGAAGACATCTACCAGAAATGAAGTTGTACAAAACCATTCCATTGATAATAAAGCTAATTTTTATGGGTCTGACAAGTATGTAATTATGTTCAGTGGTGCTTTTCAGATTTTATCACAGTCAATAAACCGCAGTGGTAATTTCATTCCCATTTGACATATTTACATGGAAACATTTGATTGGAGGAATTAGTAACCCTGAAAGCCTTGATAGATATGTTTTAATGATCTGTGACCTCCGCAGTCCCTCATCTGTTTATTGTTGCAACAG
Seq C2 exon
GCGAGAAGTCGTTTCTCTGTGACCTCTGTGGCTTCGCTGGTGGGACCCGGCATGCCCTCACCAAGCACCGTCGGCAGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043357:ENSRNOT00000065201:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(38.5=17.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]