GgaINT0094072 @ galGal4
Intron Retention
Gene
ENSGALG00000013681 | ZNF407
Description
zinc finger protein 407 [Source:HGNC Symbol;Acc:HGNC:19904]
Coordinates
chr2:91604605-91609351:-
Coord C1 exon
chr2:91609185-91609351
Coord A exon
chr2:91604695-91609184
Coord C2 exon
chr2:91604605-91604694
Length
4490 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
CCCTCATCTGTTTATTGTTGCAA
3' ss Score
-0.39
Exon sequences
Seq C1 exon
GAAATTCACATGTCACCTGTGTGACAGGAGCTTCACGGAGAAGTGGGCGCTGAACAACCACATGAAGCTGCACACCGGGGAGAAGCCATTTAAGTGCACCTGGCCCACCTGCCACTACTCCTTCCTCACGGCTTCGGCGATGAAGGACCACATTAGGACTCACACAG
Seq A exon
GTTTGCGCTGTCTTTTTCCCCAGGGCTATGGGAGCAGACGAAGGTCCTGATGGAGAAAGTAGACAGGGAGCTCATTAGGAAAACAGGTTTAGTTTTGGAGGGTGCCCCGCTCCCACCTCTCCTGCAACAGTTGGAGAGAGGGGAAGAGCGTTCAAGTTACCGCTTTGACATCCGAGTTTGCATTAATTGAGCTTCTGGAATGATCGTTCAAACGTAAGTCTGTTCTTGAGTGAAGTAAAACACACGCAAAAGTACACATCCTCTTAGCAGCATCTGTGAGGATCCTTCACTTACCACTTAAATGATGGATAGAGCTGCTATCAACCAAAAAAATTAAGGTTTTATGTAAAGGAGCTTGGTTAACTGGATACAGGTGCAAAGGAAACAGCAGAAGTAATAAGCTCTTCAGCACTTGTTATTTTTAATGGGAATCCTTTTCTCTTCTTGAAGTCTTTGTGTGTCTGAAGTAAAATACCGTCTGAAATACCAGCTTGATTTTCCTTTTCTTCAGAGAACCATAATTACTTTAAAAAAATTTCAAATTTACTGATGTATTTCAGATGGGTCAAGTGAGCATTTTTTGTAAAATATGCGCTTAAATTTAATTGATTTTACTTATACAGAACCTTTAGCAGGGGAACAGGCATTGTTAATTCTAGGTTTGAAGTTAAATAAAATTTAAGCTGTGACAAGTGCAGTGTCTAGAAAATAAGTGCCTGTGAAATATGTCGAAGTCCTTAAAAATACCATTCAGTGCTAATAACAGTAAATATCATTTTTCATACAACTAGTATGTGACATTGGTTTCAGAAGAAATAAATGTATGGAATGCAGATTTTGAAATTCTATTAGGCTTCATATAATTATAGTACATAAAGAAAAGCGGTATAAGGTTGACATTACATTATCTGAGCTCTTCGAGCAACTTAGATGTGTATACGGTTGGGAAAGAGGAAAAGAGACCTAGAAAAATCACATTACGCTTACAGCCTGGTCATTTTCGCACAAAGATCAAATGCAGTGTTTTCACTTGAAATAAAAATATTTGTTTATTATTCCCAAACAGCTTCAGCCCTGCTTTCTAAAAATCTGTGCTCTTGCTAGAAACTGTAGGTTAAAAGTTCCTCCAGAGCTGTTTGTGGGAAGCCTAGGCCTCCTTAGCTTCTTTGACAAGGGTGTTGACGATTTAAGGTCTCCAGCCTGCCCTGAGAGATCACTTATATCGAACAGCAGATGAAAAGCCAGTGCAGATGTAATTTATCGTCGGCGTTTCCTTCTAAAGAATAATTGTGGAGACTTGGCTAGATCAATAATATGGATTTTTGTTGTTAGGTCTTGTAGTCTGCACCATAATGAGAGAGAGGGGACAGTGGCTGTTTTCTAATAGAAAATAAAGGATTGGTTTCCGTGTCTTTCTACATTTGAATGCAAAATGGCACACTTGAAACTAATTCAAGTTGTTAAGAAAAGGACCATTTTCTGTTGCATTTCTGCTATCATATAAACATGGCAAGTTAGATCAGCCCCCTGTACAGCAAGTGAAATATTGCCTTTACATTTTCCTAGAAGTTAAAAAGTCACAAATTCTGAAGTGGGAATGATAAAATTGTTAAGCATATCCAGAGGAATATAAAATACATCTGTGTATCAATACGTGCCCATAACATCAAGTGAAATATTATGTCTAGATCCGAGGGATTCGACCCACATCAAACTTCAAGGCTGAAAAATATTGCACAGTTTAACTTAAAGTCACAAGTACTGACGTTTTCTGTGTGTGTTTGTATAAAAATGTATATTTGTGCATATACCATGATGCATACATGCACAAATAAGGTAATTGTTTTGTTAATGCGTCTGAAAAAGAATGTTGCAGGAAATAAATGCATCACCTTCTTCCTGAGGACCCAAACACAAGGGCCAAATCTCTTTCACTCTGGTGTTTTTGGATCCAGAGCTTCAGTGACTTCCTCAAGCGCTCTGCCTACATGAGAGCTCCCTGATCAGACCTAGAGGAGTGCGGAACATTTAACTGGCAAATCATTTTATAGGATGGGTCAATTTCCCTGCTTTTAAGCTACTGTTTGCTTTTGAGTGATTTCTCTGGAGCTCAAAAAGCAGTTCCAAGAGCCCAAATATAAAATACACGGTAAATTCATAAACTTACAAAGATGCTATGGGTACTGTGTGTCCTCATTAGTGTGAGAAGCTGCAGGCCATACTGAAGTCTGCTCTGAGATGTTAAACACAACATGAGCTAATTTATGACAATATGTAGGTGATGAACAATTTCTTGGTAGGCATGGAACAGCATTTAACTTAAAAGTGTGAATTTTATGGAGGGGTGTTAGGCATTAGAGCTAGTTAGAAAGATTTATACGTAAAATTGATTAATTAATTAAATTAATATTTAATTATAATTAAGCATTGCGTATAGTCCTTCCATTCGTTTTCTTTGATATTTTGATGAACTGAAGTGCTACGTGGTGAAGATCTGATTAGAGAAAAAAAAAAGAAGAAGAAAAAAAAAAACAAAGGAAAGAGATTATGCAGAAATCCCTGTTGTAACAATTATGTATTGCCTCAGTAAAAATAGTATGTACAAGCATTTTACAGTAAAGTTCAGACTTTGTTGTATCACTTAGCATGTAAGCGTTTTTCAAGTTAAACAGATAGAGTTTGTTAGTATGGGCTTTCATTCTGCTTTTCCTGTGTTGGGTTTTGCTGTGTTATGATCACAGATGACTAGAACTGGCTCCTGAAAGGAGCTACAAAAATGTTTTGTACCTTACATACTGTCTTGGGATACTCTCATCAGTGGACAAAATTTTCAGAAAAGCCCTAAAACGTATAAAATTTCAGTCTGTGATTTTCACGATCCAACTTGGGTCTGATCTGTAGAACAGTGATACATAGTTTGCCTTATTCTGAAGCAGAAATGAATGTGTGTCAATCATATTTCATAGCCTAGCTACCTGGTTTTAAAATCCCATTTTATTGGCAGGGTTTGGGCTGCCTTGGAAATCTGGAAGGACTTGCACAGGACCCCTGTGCTGCACTGGCTCTGGTGGGGAGTTGGTTTCTCAGCACCAGGGTCAAGGTCGGGGAGAGAGGTTGGTCCCTGCTGTGTCCCTGGGGAGCCAACTCACTCCTGAGATGGGATCCTGCTTACGTTAACACCGCCTGAAATTAATTGGGATGCGGTGCTTTCCAGAAAGCCCATGTATTAGCATGGCTGGTTACGTGGGAATAAACGACGTGGAGATTTCCAGCCCCTCTGTCTTCACCGGAGGACTCGGCAGTTTGACACCTGACCCTTTAAACCAGTCATCTTTTATAGGAACTGAACTCAATTTCCTTCCCCAAAGGGAAGAATTTGAATGAATTCCGCGTCATCACCCCATCAGTCCCTTCTTCAGTGTTGCTGCGAGAGGAGACAATTTGGCTCCAAATGACTAATGGGAATGTTTGCTGAAAAATATTTTTAAAATTTCAATCTTGTCTGAGGTTACTGAGTCCATATCTGAGGCTAGCAAGATTAACCCACAGTGATATTCCATGCAGCCTTAATGGGATGAAATTGCCTTGCATGTTAGTACATACTGGATAAAAATATTGCTGTGCAACGATAGGCTGAATTTATAGCCAACAAAGCAAAATCATCTCCTCTGTAAAAGAAAAAAAGAAAAAAAAATGGAAAAAAACCCTAAACTAAAAAAAAAAAAAAAAAAAGAGCACTTACACACTTTTAATGAGGAGTGAGCTTGCCAAAATCTCTCAAATTGTTGCAGAGGTTTGGAATGAAGAATTATCATTTGAAGATGAACAATATGAGTTGTGCTGCAATTTCAGCAGCAATCCCCAGACCTGTTTTCTTTATGTCATGAAAACTTTAGAAACAGAAACAGTACTGAATTGCCACTGGTACTGAATAATGTGGCTTTTATTGTTGCCTGGGCTTTTCAATATATCCAAGAAAATAATTTAATACTTATTAATAAATAGAAGGTAACTAAAGATGACTGTGATCTACTCTGTTTAAGATTTCTCAGTATCCTTAATTTGTTAGTAAATTCAATATATTTTATTTAAGCAGAATCATATATACAGTATATTAACTTTTTTTCCAGGCAATCTTTACTCAGCACAGAAAGGCCAGATGTATGGGAATTGTAAAAAATCAGGATATGCATAAAAACTGTTCAAGTGCATAAAGCAGCCCCATCTGGAAGACATCTAACAGAAATGAAGTTGTACAAAACCATTCCATTGATAATAAAGCTAATTTTTATGGGTCTGACAAGTATGTAATTATGTTCAGTGGTGCTTTTCAGATTTTATCACAGTCAATAAACCGCAGTGGTAATTTCATTCCCATTTGACATATTTACATGGAAACATTTGATTGGAGGAATTAGTAACCCTGAAAGCCTTGATAGATATGTTTTAATGATCTGTGACCTCCGCAGTCCCTCATCTGTTTATTGTTG
Seq C2 exon
CAACAGGCGAGAAGTCGTTCCTCTGTGACCTTTGTGGCTTTGCCGGCGGGACACGTCATGCCCTCACCAAGCATCGAAGGCAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013681:ENSGALT00000022242:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=49.1),PF134651=zf-H2C2_2=PU(35.7=17.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(60.7=54.8),PF134651=zf-H2C2_2=PU(38.5=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]