BtaINT0165490 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002594 | ZNF436
Description
zinc finger protein 436 [Source:HGNC Symbol;Acc:HGNC:20814]
Coordinates
chr2:130080466-130084459:+
Coord C1 exon
chr2:130080466-130080592
Coord A exon
chr2:130080593-130083206
Coord C2 exon
chr2:130083207-130084459
Length
2614 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTCTTTACCCTTTATTACAGATT
3' ss Score
8.56
Exon sequences
Seq C1 exon
GCACCTGTGACATTTGAAGATATGGCCATGTACCTCACCCGTGAAGAATGGAGACCTCTGGACCCTACACAAAGGGACATTTACAGGGATGTTATGCAGGAGAATTATGGAAATGTTGTCTCATTAG
Seq A exon
GTAAGAATTCTCTTTCTCCACCCCACGTTTTTTGAGACTATCAAAAATGCCTTAGCTCTTTCAACACAAACTAGTTACTTGACTTTTAAAGCACCTAATTAGATTTTGGCGTGGGCTGAGCCCTCAGGCAGATCTTTGAGTGAGGGAATATCAAGGTCATATTGTCTAGGATGAAAGATTGTTTCTGCACATTTTAGAAACACTCAGATTTCTTGCGCCCTGAATCATTTGCCATTCTCCAGCCTGTTTGTACAGATCACTGACCAAACAGGTCTGACATAATGGTACTTGCCAGGTTATAAATGCCCCTGTAAATGGTGCTTTTACTAGAAGATGAAGGGGTGCTGACCGAGGTTGACAGGAGGGCAAAAGCCACCTTTTTGTGTTTGTTTTGGCTTCAGAGCCCTAGCTTTGCCTCAGGTCCTTTATTTATCCAGAGTAGGTACTTGTCTAGAGATGTTTCAGAGTTGATCATAGATTTTGAGTGTGTCAGATGCTGTTCCAAGAGAATCCTGAACTAAATGAGATCACAAATTCTATTAAAGAGGGAAGCTAATTTTTTTTAATGGCCTGCAAACCTGTCTTTTCTCTGAGATACCCTTTTGTCTGGGTGCAACTAGAATAAACTGTTCTTGAGCCGAACAGTCTTTTGACTCACTTTGTCTCCTGTTAGGACTTGACAGAAGTTCGCAACCATGTATGGTTCACTAAGTTATCTGCCATTCATTAGGATTATTTCTTTTTCTGAAAGCTTTATCCCCATAACTTTTAACAAACAAATGGCAACTCTGAAGGGTTTCCTATTTAACCTGGACTCTCTCTGATGTCTCAACTTTCTTGGATCCTTCCTTTAGAAATGCAACTATAAATGACGCTCTCTACCCAGATCTGATGTAGTCAGGAACCCAAGTATTCCACTTATTCCAACAAAAACAAGAAATGAGAATCTTAAAGAAATGTGAATGTATATGTCAGTTGTCCAGCCCAAGGAATGCTTGTTAGAAAGATGGAAACATGGAAGCACCAAAAAAAAAACAAACAAGTTTCTTGCCCAAATAAGTTTGGGAATAGGTTAAATAATGTTACGAGACTTCTTTACCTTCAGACTCCTCAGAACCTATAATCTGGTATCAGGGCATTTTGGATTTCTGAGAAGAGGATGTTGTAAGCACCATTTACCAAACTAATTTATCCATGGACCTTTTTTCCCCAGAATACCTAGTAACCTCTTTCTAAAAAGTGTACCAAGAGACACAACTTGGAAAAGCAGTGACTGGTAGAAAGTTTCTTATACATAGTGACTTTGTGTATTTTGATTTTCTTTTAAAGTCTTTACCTAGTCAATGCCAAGAGTATTCTGAGCCAGGCATCTTTTTTGCCTTCTCCAACTGTCTCACTTCTGTTTGCATTAAAAGGCCAGTGAGGGAGACTTCCCTGGCAGTCCAGTGCTTAAGACTGTGTTCTTCCAATGCAGAGGGTGTGAGTTCAATTCCTGATCGGGGAACTAAGATCCCAAAAAGCTGCATGGTGAGGCAGGAAAAAAAAAGTACCAAAAAAAAAAAAAAAAGCCACTGAAAAGTAGCAAGTAACATTTGGCAGTCATTTTTCCTGTCGAGTGAGACTTGATATAGATTGATAAAAATCTGTTTTTCTCCAATGCTAACCCAGTAAGTCCATTTTTTTCCCCTAGTAGGTGCTTAGTAGATATTAAATAATGCTAATGATGAAGACAAGTTAAGAACATACAATACACACACACATGCGTTCACATGTAAAATATCTAGGCTCTTGGCTTTTAGAAGCTCTAATTTAGAGTCTTTTCTATTTCTTTTATATATATGTTGATTTATCTGGCTGTGCTGGGGCTTAGTTGTGGCACACGGTTTTAGTTACAGCATGTGGGATCTAGTTCCCTGACCAGGGATCGAACCCTGGCCCCCTGCATTAGGAGCTTGAAGTCTTGGCCACTGGACCACTAGGGAAGTCCCTAGAATCTTTTATTTTTCCTATTTCTGGTTTTCTTCTTTTGAAACACCAGAAACATATATACTTTGAATAAAGAACCATTAACTGTAGTGATACAAAGCATTAACTTTTATCAGACACCTGGATTTGTATCTTAGCTTCACCATTTACTACTGTATAACCTTTTGTGAACCACTTCTGTGGACCTTGGATTTCTCATTCATAAAGTGGAAATCATCATGATGTCTGGAGAAGGCAATGGCACCCCACTCTAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCAAAGAGTCAGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAATTGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGAGCCTAGTGGGCTGCCGTCTATGGGGCCGCACAGAGTTGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCATCATGATGTCTGGTGCTCAGTGTGGTTGAAGTAATTCACATAAAGAACTTAGCACAGTGCCCACCCCACAGTAGATCATTTTTGTGTGTGTTTACCAATAATATTCTTTACCCTTTATTACAG
Seq C2 exon
ATTTTGAAATCAGGAGTGAAAACGAGGTGAATCCAAAGCAAGAGATTAGTGAAGATGTAGAATTTGAGACTGCATCTGAAAGACCTGTTGGAAATACTGAGGAAAATCCTGAAAGTGAAGAGGCCTTTGACAACAGGGATAGATCAGAAAGACAATGGGGAGATTTAACCGCAGAAGAGTGGGTAAGCTATCCTCTCCAACAAGTCACAGATCTGCTTGTCCACAAAGAAGTCCACACAAGCATCCGATATCATATATGTTCTCATTGTGGAAAGGCCTTTAGTCAGATCTCAGACCTTAATCGGCATCAGAAAACCCACACGGGTGACAGACCCTATAAGTGTTATGAATGTGGGAAGGGCTTCAGTCGAAGTTCCCACCTTATTCAACATCAAAGAACACACACTGGGGAGAGGCCCTATGACTGTAATGAATGTGGGAAAAGTTTTGGAAGAAGCTCTCACCTCATTCAGCATCAGACAATCCACACTGGAGAAAAGCCTCACAAATGTAACGAGTGTGGGAAGAGTTTTTGCCGGCTGTCTCACCTCATCCAGCACCAAAGGACCCACAGTGGGGAAAAACCCTACGAGTGTGAGGAGTGTGGGAAAAGCTTCAGCCGGAGCTCTCATCTAGCTCAGCACCAGAGGACCCACACAGGTGAGAAGCCTTATGAATGTAACGAATGCGGGCGAGGCTTCAGTGAGAGATCTGATCTCATCAAACACTATCGTGTCCACACGGGGGAGAGACCCTACAAATGTGATGAGTGTGGGAAGAATTTCAGTCAGAACTCTGACCTCGTGCGCCATCGCAGAGCCCACACGGGGGAAAAGCCGTACCACTGTAATGAATGTGGGGAGAATTTCAGCCGCATCTCACACTTGGTTCAGCACCAGAGAACCCACACTGGGGAAAAGCCATATGAATGTAATGCCTGTGGGAAAAGCTTCAGCCGGAGCTCTCACCTAATCACACACCAGAAAATTCACACTGGAGAGAAGCCCTATGAGTGCAACGAGTGTTGGCGAAGCTTTGGTGAAAGGTCGGACCTGATTAAACATCAGAGAACCCACACAGGAGAGAAACCCTATGAGTGTGTGCAGTGTGGAAAAGGATTCACCCAGAGCTCCAACCTCATCACACATCAAAGAGTTCATACAGGAGAAAAGCCTTATGAATGCACAGAATGTGAGAAGAGTTTCAGCCGGAGCTCAGCTCTTATTAAACATAAGAGAGTGCACACTGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002594:ENSBTAT00000003359:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.230
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]