HsaINT0187235 @ hg19
Intron Retention
Gene
ENSG00000125945 | ZNF436
Description
zinc finger protein 436 [Source:HGNC Symbol;Acc:20814]
Coordinates
chr1:23685941-23693661:-
Coord C1 exon
chr1:23693535-23693661
Coord A exon
chr1:23689715-23693534
Coord C2 exon
chr1:23685941-23689714
Length
3820 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTGTTTACTTTTTATTACAGATT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GCACCTGTGACGTTTGAAGATATGGCCATGTATCTCACCCGGGAAGAATGGAGACCTCTGGACGCTGCACAGAGGGACCTTTACCGGGATGTTATGCAGGAGAATTATGGAAATGTTGTCTCACTAG
Seq A exon
GTAAGTAAGGATTCTACCTTTCTTTGCCTCCACGTTTTTGAGATCGTGTCAAAATGACTTAGTTCTTTCAACACAGCCTAGTGGTTTGATTTTTTAAAGCACTTAATTGGATATTGGCTTGACTTGAGTCCTCAGGCAGATCTTTGAATATGGGAACATCCAGGTCATATTGTCTAAAAAGAAAAAAACTGCTTCTGCACGTCTTAGACGTTCAGATTTCTTGTGCCCTGAGTCATTTTCCAATCTCCAGCCTGTTTGTACAGATCACTGACCAAACAGGTCTGGCATAATAGTGCTTGCCAGAATATAAATGCCCCGTAACTAGTGCTTTTACTCTAGGGTGCTAAAAGATGAGGGGATTCTAACCCAGGTTCATGGGAGGGCGAAAGCCACCTTTTTGTGTTTGTTTTGGCTTCAGAGCCCTAGCTTTGCCTCAAGTTCCTTAGCTGAGTAGATTCTCATCTAGAGATGTTTCAGTGTTGATGATGATAGATTTGTAGTGTGTCAAATGCTGTTCCAGAAGAATGCTGAAATAGATCACAAATTCTATTAGAGAGGGCAGCTGATTTTTTTTTCATGGTCTGCAAGCCTGTCTTCTCTCTTTGCTGTACTTTGGTCTGGGTGTAACTAGAATAAAGAGTATATTCTTGAGCTGAACGGTCTTTTGACTCACTTTGCCTCACTTTGCCTCCTGTCAAGACTTGACAGACATTAGCAAGCGTGTATGGGTCACTAGGTCATTTGCCATTCATTAGGATTAATCCTGTTTTTGAAATCTTTATTCCCATAGCCTTTTTCAGAACAAAAGGCAACTCTGAGGGCTTTCCTTTTTAACTTGAGCTTTCTCTGATGTCCCTAGTTTCTTGAATCCTTTCTTTATAAAAGTAACCATAAATAGTTATCTATCCAGATCTATTGCAGTCTGTAACCCAAATATTCCACTGAATCCAACAAAAGCAAAAAATGACAATCTTTAAAAAATGTGAATTTACAATTCTACAGTTTAGCCCCAAAAGCACTTGTTAGAAGGATGAAAGCGCCAAAAAACTGGTTTCTTGCCCAAATAAGTTTGGGAATGGGAATGGGTTTAAAAATGATTACAAGGCTTTTTTTTTTTTTTTTTTGAGACAGGATCTTGTTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCACAACTCATTGCAGCCTTGACTTCCCAGGCCCAGGTCATCCTCCCATCTCAGCTTCCTGAGTAGCTGGGATCACAGATGCGTACCACCTTGCCCGGCTAATTCTTTTTATTTTTTAAAAAATTTTAAATTAATTAATTAATTAATTAATTTTTTTGAAACAGAGTCTCAGTCTGTTGCCCAGACTGGAGTGCAGTGGCCCAATCTTGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGACTAGCTGTGATTACAGGTGCATGCCACCACGCTCAGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTAGGAATACAGGTGTCAGGCACCATGCTCAGCTTCTTTTTATTTTTTTATTATTTATTTATTTTTTTGTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCACCACACTCGGCTAGTTTTTGCGTTTTTTTTTTTTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTATAGACGTGAGCCACCGCGCCCGGCCTGCCTCTTTTTATTTTTAATAGAAGTGAGACCTCCCTATGTTGCACAGGCTGGTCTCAAACTCCTAGGCTCAAGTGATCCTCCTGCATCAGCCTCCCAAAGTGCTGGGATTAGAGGCCTGAGCTACTGCATCTGGCCTTATAAGGCCTTTTTACCTCAGGATTCCTTAGAACCTTTAATGTGTTATTAGGCATTGTGAATTTTGAAGGAAATGATATTGTATGTACCATTTACCAACCCAGTTTATCCATGAACCCTTTTCTCCCAAAATACATACTTTCTTTCTGAAGAGTGTACTAAGAAACCCAATTTGGAGAATGCAGTGTCTGGTATAAAACTCCTTGTAGACAGTGGTTGTGTATTTTGATTTTCATTTGAAGACTGCATGTGAAATATACTTAGACAATGCCAAGAATGTTCTCAGCCAGACATCTTTTTTGCCTTCTTCAACTTTCCCACTCCTATTTTCATTAAAAGGTCACTGAAAAGTAGGAAGTGACATTTGTCAGTCACTTTTCTGTCAACTATGACATAGGTAAAGATTCATTTTTCTCCATATTAACATAGTTGGTTCTGGCCAGGCACGGTGGCTCACGCCTGTAATCCTAGCAGTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGATCAGGAGTTCAAGACCCGCCTGGCCAACATGGTAAAACCTGTCTCTACTAAAAATACAAGAAAATAGCTGGATGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGAAAGATGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTACAGTGAGCGGAGATTGCGCCATTGCACTCCGGCCTGGGCAACAAGAGTGAAATTCCATCTCAAAAAACAAAACAAAACAAACAAACAAACAAAAACATAGTGGCTTCTTAGTAAATATTTTATGATGCTACTAATGATGAAGGCTTGGCAAGTTAAAAAATACATACTCACAAAATACCTAGAATCTTGCCTTTTAGATATTCTAATTTAGAGTCTCATATTTTCTGCTTCCAGTGTTCTTTCAAAACACGAATATATATAGTTTTTTTTTTAAGAGACAGGGTCTCGTTCTGTCACCCATATTGGTGTGCGGTGGCACAATCACAGCTTATTGCAGCCTTGAACTCCTGGGCTCAAGTGATCCTCTTACCTCAGCCTCCTGAGTAGCTGGGACTACAGTTGCATGCCACCACATCCACCTAATTTTTTAAATTTTTTTGTAGAGATGGGTTCTCCCTATATTGCCCAGGCTGGTCTTGAACTCCTGGCCTTAAGTGTTCCTCCTGACTTGGCCTCCTAAAGTGTTAGGATTACATGCGTGAGCCACGGCACCTGGCCTGTATAGTTTTCTTAATGAATCATTAATTACAGCGATACAGAATGTGAATTTTGACAGACCTGAGTTTGAATACTGGCTCTACCATTTACTATGGCCTTGAGCAAGTCAATTCACTTGTCTGGGTCTTGGATTTCTCATTAATGAAGTAGAAATAATCACAATTCCTGACTCTCAGAATAGCTGTGATAAAGAATATATGTGACGAAGAATATAAATAATTTAGGCTGGCCACAGTGGCTCAGAAGTTCAATACCAGCCTGACCAATATAGTGAAACCCTGTGTCTACTAAAAATAAAAAAATTAGCCGGGCATGGTGGCGTGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCCAAGGCAACACAGTGAGACTCTGTCTAAAAAAAAAAAAAATTTAGTATAGTGCCTGGCACACAATAGGTAATTTTTGTACTTACTAGTCTTATTGTTTACTTTTTATTACAG
Seq C2 exon
ATTTTGAGATCAGGAGTGAGAACGAGGTAAATCCCAAGCAAGAGATTAGTGAAGATGTACAATTTGGGACTACATCTGAAAGACCTGCTGAGAATGCTGAGGAAAATCCTGAAAGTGAAGAGGGCTTTGAAAGCGGAGATAGGTCAGAAAGACAATGGGGAGATTTAACAGCAGAAGAGTGGGTAAGCTATCCTCTCCAACCAGTCACTGATCTACTTGTCCACAAAGAAGTCCACACAGGCATCCGCTATCATATATGTTCTCATTGTGGAAAGGCCTTCAGTCAGATCTCAGACCTTAATCGACATCAGAAGACCCACACTGGAGACAGACCCTATAAATGTTATGAATGTGGAAAAGGCTTCAGTCGCAGCTCACACCTTATTCAGCATCAAAGAACACATACTGGGGAGAGGCCTTATGACTGTAACGAGTGTGGGAAAAGTTTTGGAAGAAGTTCTCACCTGATTCAGCATCAGACAATCCACACTGGAGAGAAGCCTCACAAATGTAATGAGTGTGGAAAAAGTTTCTGCCGTCTCTCTCACCTAATCCAACACCAAAGGACCCACAGTGGTGAGAAACCCTATGAGTGTGAGGAGTGTGGGAAAAGCTTCAGCCGGAGCTCTCACCTAGCTCAGCACCAGAGGACCCACACGGGTGAGAAACCTTATGAATGTAACGAATGTGGCCGAGGCTTCAGTGAGAGATCTGATCTCATCAAACACTATCGAGTCCACACAGGGGAGAGGCCCTACAAGTGTGATGAGTGTGGGAAGAATTTCAGTCAGAACTCCGACCTTGTGCGTCATCGCAGAGCCCACACGGGAGAGAAGCCATACCACTGTAACGAATGTGGGGAAAATTTCAGCCGCATCTCACACTTGGTTCAGCACCAGAGAACTCACACTGGAGAGAAGCCATATGAATGCAATGCTTGTGGGAAAAGCTTCAGCCGGAGCTCTCATCTCATCACACACCAGAAAATTCACACTGGAGAGAAGCCTTATGAGTGTAATGAGTGTTGGCGAAGCTTTGGTGAAAGGTCAGATCTAATTAAACATCAGAGAACCCACACAGGGGAGAAGCCCTACGAGTGTGTGCAGTGTGGGAAAGGTTTCACCCAGAGCTCCAACCTCATCACACATCAAAGAGTTCACACGGGAGAGAAACCTTATGAATGTACCGAATGTGAGAAGAGTTTCAGCAGGAGCTCAGCTCTTATTAAACATAAGAGAGTTCATACGGACTAAGCTGTAATTATGATGGCTGAGAAATGATTCATTTGAAGATACAATTTTATTTGATATCAATGAACGCCCTCAAGACTGAGCTGCTTTTATCATACTCTCCTAGTTGTGGGCCACGATTTAAACCATCAGAGATGACAAGCCATTTGAAATTCTGACCCTCAGCTTTGGGAATGTTATCTCCTCCAAAATGGTGATTTTTATTCACTCAATGGGTTACTTCATTAAAAGCAGCCCCACAAGTAACTGGAAATCTGAAGACCAGGGGACAAATGCTGGTGAATGCTTAGGCCTGGAAATGGAGTAAATCTTTCAATGTTATTTTCTCCCATCCTTGGCCCAAGGAACTATGCTAAGTGAAACGTGGGACTGTAATAGGGTGGTAATGGCTGCTTTGGAAAAAGGCAACTAGAGACTCTGCCTAAATTGCCACACCTATTCACACACCATAGTAGTTGGGCACACACATCTTCCCTTCCAAAGGGCTTTTTCCTTGAGTTGCTCATGCATTTGTATCTTTTCCATCTTCCTGAGGGCAAGATTTTGCACGATGAAGGCAATGATTGTAACTTTTCTCCTTCTCATTGTTTCTAATTAGCTCCTTTAAAGCTTGCATCTTTGTGAAGGCTAACTGAAGATACGGTTGGAAAGGAAAAATGAGACACAGGTTTGGGGACCAAGGACCCATCAATGATGGTGACTTTAGCAGAAGATGCCCACAGTTATTACTGCCATTAATCAGATTTATGAATTTTCTTTGGGGATCACTATAGGGAATATTGTATAGAAAATATCTTCAAGAAAAGATAGGACCATCAGTGACAGTTAAGTGTAAGGAGCAAGTGGAATTGAGTCCTTCAGGGAAGGAACCACAGAGTCCCTTCCCAAGGAATGTAGGTCGTTTCTGTGTTCTTTCCCTTCTAATCTTTAAGATCAACTCTTCCTATCCTGCTAACTCTAAGATTTGATAAGGGCCACATCCCAGTGTTTATCTTAGCTTGCATCAGGGCATGTGTATGTACAGTAATGTGTATTCCTGTGGTTTTTCTAATAGAAACTGAATTTACAGAGACTTAGCATGTTCTTGGGTGATGTGAGTCATGTGACAGAAGTACAGACATAACTCCAATGTGAGAAATGTCCTTTTTTCATTATGGAAAATAATTTAAACACTAGTGCTTTAGTGTGCACTCTCCTGTAAGGTCTGTCTTTGTACAGAGCTAAGCACTTGTTTGTATGTGTTTGTCAATTGTGGAAGATAATGACCAGACAAATAGGTCGATTGTCCTATTCTCAGAATGAATTATCTTCTATGGTAATGAAGAACTCTTTGGCTTAGTCAGAAGGAATTAACGAACCTCGGTAGGAATGTATTTCCATCCTCCCACCCTACAGATATAAGAGGTTAAAATAACAGTTCGCCCAATTTAAGCCCAGTAGTGTCAGTTTTCCTAATCTCAGTCCAGGTAGGAATTAAGAAATATCTCAAGTGTTGATGCTATCCAAGCATGTTGGGGTGGAAGGGAATTGGTGCCCAGAAAATGGGACTGGAGTGAGGAATATCTTTTCTTTTGAGAGTACCCCCAGTTTATTTCTACTGTGCTTTATTGCTACTGTTCTTTATTGTGAATGTTGTAACATTTTAAAAATGTTTTGCCATAGCTTTTTAGGACTTGGTGTTAAAGGAGCCAGTGGTCTCTCTGGGTGGGTACTATAATGAGTTATTGTGACCCACAGCTGTGTGGGACCACATCACTTGTTAATAACACAACCTTTAAAGTAACCCATCTTCCAGGGGGGTTCCTTCATGTTGCCACTCCTTTTTAAGGACAAACTCAGGCAAGGAGCATGTTTTTTTGTTATTTACAAAATCTAGCAGACTGTGGGTATCCATATTTTAATTGTCGGGTGACACATGTTCTTGGTAACTAAACTCAAATATGTCTTTTCTCATATATGTTGCTGATGGTTTTAATAAATGTCAAAGTTCTCCTGTTGCTTCTGTGAGCCACTATGGGTATCAGCTTGGGAGTGGCCATAGATGACCGCATTTCCATGACCTAACTGTATTTCACCCCCTTTTCCTTCCCTACTGTTCTTGCCCCACCCCAACCAGTTCCTGCTGCTGCTTTTGGCTTCTTGGAGGTGAAGGGCTTAAAACAAGGCTTCTAAGCACCCAGCTATCTCCATACATGAACAATCTAGCTGGGAAACTTAAGGGACAAGGGCCACACCAGCTGTCTCCTCTTTCTGCCAATTGTTGCCCGTTTGCTGTGTTGAACTTTGTATAGAACTCATGCATCAGACTCCCTTCACTAATGCTTTTTGCATGCCTTCTGCTCCCAAGTCCCTGGCTGCCTCTGCACATCCCGTGAACACTTTGTGCCTGTTTTCTATGGTTGTGGAGAATTAATGAACAAATCAATATGTAGAACAGTTTTCCTTATGGTATTGGTCACAGTTATCCTAGTGTTTGTATTATTCTAACAATATTCTATAATTAAAAATATAATTTTTAAAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125945-ZNF436:NM_030634:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.2),PF127602=Zn_Tnp_IS1595=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)